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Search of human proteins with 32699045
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32699045 Parkinson disease 7 domain containing 1 [Homo
sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32699045 Parkinson disease 7 domain containing 1 [Homo sapiens] 443 e-125
gi|239749942 PREDICTED: similar to Parkinson disease 7 domain co... 441 e-124
gi|239749944 PREDICTED: similar to Parkinson disease 7 domain co... 350 5e-97
gi|4503963 glucosaminyl (N-acetyl) transferase 2, I-branching en... 30 1.2
gi|21717810 glucosaminyl (N-acetyl) transferase 2, I-branching e... 30 1.2
gi|54112394 calcium channel, voltage-dependent, alpha 2/delta su... 30 2.1
gi|126723547 hypothetical protein LOC57523 [Homo sapiens] 30 2.1
gi|8923009 non-SMC element 4 homolog A [Homo sapiens] 28 4.7
gi|4504465 homeobox B2 [Homo sapiens] 28 6.1
gi|54112392 calcium channel, voltage-dependent, alpha 2/delta su... 28 8.0
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso... 28 8.0
gi|45597175 TBC1 domain family, member 9B (with GRAM domain) iso... 28 8.0
>gi|32699045 Parkinson disease 7 domain containing 1 [Homo sapiens]
Length = 220
Score = 443 bits (1139), Expect = e-125
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN
Sbjct: 1 MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
Query: 61 ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP 120
ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP
Sbjct: 61 ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP 120
Query: 121 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 180
ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF
Sbjct: 121 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 180
Query: 181 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSRK 220
SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSRK
Sbjct: 181 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSRK 220
>gi|239749942 PREDICTED: similar to Parkinson disease 7 domain
containing 1 isoform 2 [Homo sapiens]
Length = 219
Score = 441 bits (1134), Expect = e-124
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN
Sbjct: 1 MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
Query: 61 ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP 120
ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP
Sbjct: 61 ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP 120
Query: 121 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 180
ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF
Sbjct: 121 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 180
Query: 181 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 219
SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR
Sbjct: 181 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 219
>gi|239749944 PREDICTED: similar to Parkinson disease 7 domain
containing 1 isoform 1 [Homo sapiens]
Length = 183
Score = 350 bits (898), Expect = 5e-97
Identities = 182/219 (83%), Positives = 183/219 (83%), Gaps = 36/219 (16%)
Query: 1 MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN
Sbjct: 1 MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESN 60
Query: 61 ARWVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSESKP 120
ARWVQDFRLKAYASPAKLESID +P
Sbjct: 61 ARWVQDFRLKAYASPAKLESID------------------------------------EP 84
Query: 121 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 180
ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF
Sbjct: 85 ICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDSGACF 144
Query: 181 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 219
SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR
Sbjct: 145 SASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSR 183
>gi|4503963 glucosaminyl (N-acetyl) transferase 2, I-branching
enzyme isoform B [Homo sapiens]
Length = 400
Score = 30.4 bits (67), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 91 IPSCPGALTDLASSGSLARILQHFHSESKPICAVGHGVAALCCATNEDRSWVFDSYSL 148
IP PG++ + + +G+L R ++ E + GH V +C N D W+ +S SL
Sbjct: 305 IPGVPGSMPNASWTGNL-RAIKWSDMEDRHGGCHGHYVHGICIYGNGDLKWLVNSPSL 361
>gi|21717810 glucosaminyl (N-acetyl) transferase 2, I-branching
enzyme isoform A [Homo sapiens]
Length = 402
Score = 30.4 bits (67), Expect = 1.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 91 IPSCPGALTDLASSGSLARILQHFHSESKPICAVGHGVAALCCATNEDRSWVFDSYSL 148
IP PG++ + + +G+L R ++ E + GH V +C N D W+ +S SL
Sbjct: 307 IPGVPGSMPNASWTGNL-RAIKWSDMEDRHGGCHGHYVHGICIYGNGDLKWLVNSPSL 363
>gi|54112394 calcium channel, voltage-dependent, alpha 2/delta subunit
2 isoform b [Homo sapiens]
Length = 1143
Score = 29.6 bits (65), Expect = 2.1
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 29/150 (19%)
Query: 63 WVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFHSE----- 117
W Q +A SP ES + S + + G+ +R+ FH++
Sbjct: 987 WFQADPAEAEGSPETRESSCVMKQTQYYFGSVNASYNAIIDCGNCSRL---FHAQRLTNT 1043
Query: 118 -------SKPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVE 170
KP+C+ L T+ D GP CELV+ P + R P +
Sbjct: 1044 NLLFVVAEKPLCSQCEAGRLLQKETHSD-----------GPEQCELVQRPRYRRGPHICF 1092
Query: 171 DF--VKDSGAC-FSASEPDAVHVVLDRHLV 197
D+ +D+ C AS P ++ V++ L+
Sbjct: 1093 DYNATEDTSDCGRGASFPPSLGVLVSLQLL 1122
>gi|126723547 hypothetical protein LOC57523 [Homo sapiens]
Length = 1898
Score = 29.6 bits (65), Expect = 2.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 56 VTESNARWVQDFRLKAYAS-----------------PAKLESIDGARYHALLIPSCPGAL 98
V + N RWV+ F LK Y P +LE+ G ++ ++ SC AL
Sbjct: 1638 VADPNTRWVEAFPLKPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQFARHVLVSCGLAL 1697
Query: 99 TDLASSGSLARILQ 112
A SL+R LQ
Sbjct: 1698 G--AQVASLSRDLQ 1709
>gi|8923009 non-SMC element 4 homolog A [Homo sapiens]
Length = 385
Score = 28.5 bits (62), Expect = 4.7
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 166 PLVVEDFVKDSGACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGS 218
PL E+ ++D + PD +V D +TG+ A +T FL GS
Sbjct: 175 PLEAEELIRDEDS------PDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGS 221
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 28.1 bits (61), Expect = 6.1
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 54 VDVTESNAR-WVQDFRLKAYASPAKLESIDGARYHALLIPSCPGALTDL 101
+D+TE + W Q+ R+K E DG P+CPGAL D+
Sbjct: 180 LDLTERQVKVWFQNRRMKHKRQTQHREPPDGE-------PACPGALEDI 221
>gi|54112392 calcium channel, voltage-dependent, alpha 2/delta subunit
2 isoform a [Homo sapiens]
Length = 1145
Score = 27.7 bits (60), Expect = 8.0
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 150 GPSVCELVRAPGFARLPLVVEDF--VKDSGAC-FSASEPDAVHVVLDRHLV 197
GP CELV+ P + R P + D+ +D+ C AS P ++ V++ L+
Sbjct: 1074 GPEQCELVQRPRYRRGPHICFDYNATEDTSDCGRGASFPPSLGVLVSLQLL 1124
>gi|45597177 TBC1 domain family, member 9B (with GRAM domain)
isoform b [Homo sapiens]
Length = 1233
Score = 27.7 bits (60), Expect = 8.0
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 162 FARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVT---GQNASSTVPA 208
F +L + + F+ ++ CF++ E DA H+++ VT ++SS +P+
Sbjct: 314 FNKLHIPGQMFISNNYICFASKEEDACHLIIPLREVTIVEKADSSSVLPS 363
>gi|45597175 TBC1 domain family, member 9B (with GRAM domain)
isoform a [Homo sapiens]
Length = 1250
Score = 27.7 bits (60), Expect = 8.0
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 162 FARLPLVVEDFVKDSGACFSASEPDAVHVVLDRHLVT---GQNASSTVPA 208
F +L + + F+ ++ CF++ E DA H+++ VT ++SS +P+
Sbjct: 314 FNKLHIPGQMFISNNYICFASKEEDACHLIIPLREVTIVEKADSSSVLPS 363
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,540,387
Number of Sequences: 37866
Number of extensions: 356725
Number of successful extensions: 672
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 13
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.