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Search of human proteins with 32698964
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo
sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo sap... 438 e-123
gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo sa... 227 6e-60
gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo sa... 210 6e-55
gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo sa... 142 1e-34
gi|145275198 ADAMTS-like 3 precursor [Homo sapiens] 34 0.097
gi|83776598 virus-induced signaling adapter [Homo sapiens] 30 1.8
gi|148886654 polydom [Homo sapiens] 30 1.8
gi|124430557 a disintegrin-like and metalloprotease with thrombo... 29 2.4
gi|14550407 complement component 2 isoform 1 preproprotein [Homo... 29 3.1
gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens] 29 3.1
gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens] 28 4.1
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 28 4.1
gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens] 28 6.9
gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens] 28 6.9
gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens] 28 6.9
gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 28 6.9
gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens] 28 6.9
gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens] 28 6.9
gi|4506875 selectin L precursor [Homo sapiens] 27 9.0
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 27 9.0
>gi|32698964 vitelline membrane outer layer 1 isoform 1 [Homo
sapiens]
Length = 202
Score = 438 bits (1127), Expect = e-123
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
Query: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEWSEPLWCRGGAYL 120
GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEWSEPLWCRGGAYL
Sbjct: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEWSEPLWCRGGAYL 120
Query: 121 VAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKGACGLQTKI 180
VAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKGACGLQTKI
Sbjct: 121 VAFSLRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKGACGLQTKI 180
Query: 181 QGPRGLGDDTALNDARLFCCRS 202
QGPRGLGDDTALNDARLFCCRS
Sbjct: 181 QGPRGLGDDTALNDARLFCCRS 202
>gi|222144303 vitelline membrane outer layer 1 isoform 2 [Homo
sapiens]
Length = 114
Score = 227 bits (578), Expect = 6e-60
Identities = 105/106 (99%), Positives = 105/106 (99%)
Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
Query: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWG 106
GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSG WG
Sbjct: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGRWG 106
Score = 53.9 bits (128), Expect = 9e-08
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 93 GNTHVVESQSGS-WGEWSEPLWCRGGAYLVAFSLRVEAPTTL-GDNTAANNVRFRCSDGE 150
G T V+E SG WG+W+ P C G + FSL+VE P + GD+TA N +R C+ G
Sbjct: 31 GYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGN 90
Query: 151 ELQGPGLSWGDFGDW 165
L + G W
Sbjct: 91 VLGNTHVVESQSGRW 105
Score = 46.2 bits (108), Expect = 2e-05
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 156 GLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGL-GDDTALNDARLFCCR 201
G WGD+ W + CP G A G K++ P+G+ GDDTALN RL C R
Sbjct: 41 GGPWGDWA-WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCAR 88
>gi|222144305 vitelline membrane outer layer 1 isoform 3 [Homo
sapiens]
Length = 102
Score = 210 bits (535), Expect = 6e-55
Identities = 97/98 (98%), Positives = 98/98 (100%)
Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
Query: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVV 98
GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHV+
Sbjct: 61 GFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVL 98
Score = 52.4 bits (124), Expect = 3e-07
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 93 GNTHVVESQSGS-WGEWSEPLWCRGGAYLVAFSLRVEAPTTL-GDNTAANNVRFRCSDGE 150
G T V+E SG WG+W+ P C G + FSL+VE P + GD+TA N +R C+ G
Sbjct: 31 GYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGN 90
Query: 151 EL 152
L
Sbjct: 91 VL 92
Score = 46.2 bits (108), Expect = 2e-05
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 156 GLSWGDFGDWSDHCPKG--ACGLQTKIQGPRGL-GDDTALNDARLFCCR 201
G WGD+ W + CP G A G K++ P+G+ GDDTALN RL C R
Sbjct: 41 GGPWGDWA-WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCAR 88
>gi|222144307 vitelline membrane outer layer 1 isoform 4 [Homo
sapiens]
Length = 70
Score = 142 bits (359), Expect = 1e-34
Identities = 65/66 (98%), Positives = 66/66 (100%)
Query: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS
Sbjct: 1 MERGAGAKLLPLLLLLRATGFTCAQTDGRNGYTAVIEVTSGGPWGDWAWPEMCPDGFFAS 60
Query: 61 GFSLKV 66
GFSLK+
Sbjct: 61 GFSLKL 66
Score = 32.3 bits (72), Expect = 0.28
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 93 GNTHVVESQSGS-WGEWSEPLWCRGGAYLVAFSLRV 127
G T V+E SG WG+W+ P C G + FSL++
Sbjct: 31 GYTAVIEVTSGGPWGDWAWPEMCPDGFFASGFSLKL 66
>gi|145275198 ADAMTS-like 3 precursor [Homo sapiens]
Length = 1691
Score = 33.9 bits (76), Expect = 0.097
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 29/152 (19%)
Query: 51 EMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGS---WGE 107
E P +F F+L PQG +DT + NT E + G+ WG+
Sbjct: 27 EKSPGAYFLPEFALS---PQGSFLEDTTGEQFLTYRYDDQTSRNTRSDEDKDGNWDAWGD 83
Query: 108 WSE-PLWCRGGAYLVAFSLRVEAPTTLGDNTAANNVRFR-CS------DGEELQGPGLS- 158
WS+ C GGA ++SLR G N N+R++ CS D E+ + S
Sbjct: 84 WSDCSRTCGGGA---SYSLR---RCLTGRNCEGQNIRYKTCSNHDCPPDAEDFRAQQCSA 137
Query: 159 ------WGDFGDWSD--HCPKGACGLQTKIQG 182
G + +W + P C L+ QG
Sbjct: 138 YNDVQYQGHYYEWLPRYNDPAAPCALKCHAQG 169
>gi|83776598 virus-induced signaling adapter [Homo sapiens]
Length = 540
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 92 LGNTHVVESQSGSWGEWSEPLWCRGGAYLVAFSLRVEAPTTL 133
L + E + G+ + +EP+ C GA A SL + PTTL
Sbjct: 261 LASAGAAEGKQGAESDQAEPIICSSGAEAPANSLPSKVPTTL 302
>gi|148886654 polydom [Homo sapiens]
Length = 3571
Score = 29.6 bits (65), Expect = 1.8
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 86 CARGNVL---GNTHVVESQSGSWGEWSEPL-WCRGGAYLVAFSLRVEAPTTLGDNTAANN 141
C RG L H E+ G WS P+ C+ V F + A + + N
Sbjct: 3325 CNRGYSLEGPSEAHCTEN-----GTWSHPVPLCKPNPCPVPFVIPENALLSEKEFYVDQN 3379
Query: 142 VRFRCSDGEELQGPG-LSWGDFGDW---SDHCPKGACGLQTKIQGPRGLGDDTALNDARL 197
V +C +G LQG G ++ W S C K +CG ++ G D
Sbjct: 3380 VSIKCREGFLLQGHGIITCNPDETWTQTSAKCEKISCGPPAHVENAIARGVHYQYGDMIT 3439
Query: 198 FCCRS 202
+ C S
Sbjct: 3440 YSCYS 3444
>gi|124430557 a disintegrin-like and metalloprotease with
thrombospondin type 1 motifs 20 [Homo sapiens]
Length = 1910
Score = 29.3 bits (64), Expect = 2.4
Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 23/115 (20%)
Query: 70 QGIPGDDTALNGIRLHCARGNVLGNTHVVESQSGSWGEWSEPL-----WCRGGAYLVAFS 124
Q +P D G +HC G + +G WG W EP C GG
Sbjct: 524 QHVPPADGTDCGPGMHCRHGLCVNKETETRPVNGEWGPW-EPYSSCSRTCGGGIESATRR 582
Query: 125 LRVEAPTTLGDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKGACGLQTK 179
P G+ ++FR + +D CPKG + K
Sbjct: 583 CNRPEPRNGGNYCVGRRMKFRSCN-----------------TDSCPKGTQDFREK 620
>gi|14550407 complement component 2 isoform 1 preproprotein [Homo
sapiens]
Length = 752
Score = 28.9 bits (63), Expect = 3.1
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 21/106 (19%)
Query: 104 SWGEWSEPLWCRGGAYLVAFSLRVEAPTT---------LGDNTAANNVRFRCSDGEELQG 154
S G+W P R + V +R AP + LG NV F C DG L+G
Sbjct: 66 SSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRG 125
Query: 155 -PGLSWGDFGDW----------SDHCPKGACGLQTKIQGPR-GLGD 188
P G W + HCP L G R G GD
Sbjct: 126 SPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLGAVRTGFRFGHGD 171
>gi|32880231 vestigial-like 2 isoform 1 [Homo sapiens]
Length = 317
Score = 28.9 bits (63), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 40 SGGPWGDWAWP---EMCPDGFFASGFSLKVEPPQGIP 73
S GPW D ++P P F+ S + V PP G P
Sbjct: 125 SSGPWRDCSFPMSQRSFPASFWNSAYQAPVPPPLGSP 161
>gi|92110053 CUB and Sushi multiple domains 2 [Homo sapiens]
Length = 3487
Score = 28.5 bits (62), Expect = 4.1
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 135 DNTAANNVRFRCSDGEELQGPG----LSWGD-FGDWSDHCPKGACGL-QTKIQGPRGL 186
D ++V+F C++G +LQG + D F WSDH P + ++GP G+
Sbjct: 358 DFRLGSSVQFTCNEGYDLQGSKRITCMKVSDMFAAWSDHRPVCRARMCDAHLRGPSGI 415
>gi|110825974 ADAM metallopeptidase with thrombospondin type 1
motif, 2 isoform 1 preproprotein [Homo sapiens]
Length = 1211
Score = 28.5 bits (62), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 85 HCARGNVLGNTHVVESQSGSWGEWS 109
HC +G+ + T + + GSWG WS
Sbjct: 544 HCFKGHCIWLTPDILKRDGSWGAWS 568
>gi|238550169 tRNA phosphotransferase 1 isoform 5 [Homo sapiens]
Length = 254
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
WP + G G + + G+PGD ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173
>gi|238550165 tRNA phosphotransferase 1 isoform 4 [Homo sapiens]
Length = 216
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
WP + G G + + G+PGD ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173
>gi|13899325 tRNA phosphotransferase 1 isoform 2 [Homo sapiens]
Length = 204
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
WP + G G + + G+PGD ++G+R HC
Sbjct: 88 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 124
>gi|238550157 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
WP + G G + + G+PGD ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173
>gi|238550153 tRNA phosphotransferase 1 isoform 1 [Homo sapiens]
Length = 253
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
WP + G G + + G+PGD ++G+R HC
Sbjct: 137 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 173
>gi|238550149 tRNA phosphotransferase 1 isoform 3 [Homo sapiens]
Length = 255
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 49 WPEMCPDGFFASGFSLKVEPPQGIPGDDTALNGIRLHC 86
WP + G G + + G+PGD ++G+R HC
Sbjct: 139 WPSILLKGLSCQGRT-HIHLAPGLPGDPGIISGMRSHC 175
>gi|4506875 selectin L precursor [Homo sapiens]
Length = 372
Score = 27.3 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 133 LGDNTAANNVRFRCSDGEELQG-PGLSWGDFGDWSDHCPKGAC 174
LG+ + ++ F CS+G L G + G FG+WS P+ C
Sbjct: 214 LGNFSFSSQCAFSCSEGTNLTGIEETTCGPFGNWSS--PEPTC 254
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 27.3 bits (59), Expect = 9.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 134 GDNTAANNVRFRCSDGEELQGPGLSWGDFGDWSDHCPKGACGLQTKIQGP 183
G AA+ R+R +GP + G+ G+ D P+GA ++QGP
Sbjct: 167 GSRYAADRRRYRRGYYGRRRGPPRNAGEIGEMKDGVPEGA-----QLQGP 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.139 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,442,090
Number of Sequences: 37866
Number of extensions: 469352
Number of successful extensions: 952
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 32
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.