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Search of human proteins with 32698855
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|32698855 hypothetical protein LOC144809 [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|32698855 hypothetical protein LOC144809 [Homo sapiens] 280 2e-76
gi|156231347 hypothetical protein LOC29902 [Homo sapiens] 45 1e-05
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 29 1.4
gi|21735548 centrosomal protein 2 [Homo sapiens] 27 4.1
gi|208610019 hypothetical protein LOC114926 [Homo sapiens] 27 5.4
gi|208610017 hypothetical protein LOC114926 [Homo sapiens] 27 5.4
gi|208610015 hypothetical protein LOC114926 [Homo sapiens] 27 5.4
gi|208610013 hypothetical protein LOC114926 [Homo sapiens] 27 5.4
gi|71772838 sorting nexin 22 [Homo sapiens] 27 7.0
gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens] 27 7.0
gi|194306629 endoplasmic reticulum aminopeptidase 2 [Homo sapiens] 26 9.1
gi|11641261 endoplasmic reticulum aminopeptidase 2 [Homo sapiens] 26 9.1
gi|9961250 ATP-binding cassette, subfamily B, member 4 isoform B... 26 9.1
gi|9961252 ATP-binding cassette, subfamily B, member 4 isoform C... 26 9.1
gi|4505771 ATP-binding cassette, subfamily B, member 4 isoform A... 26 9.1
gi|221316586 BSD domain containing 1 isoform d [Homo sapiens] 26 9.1
gi|221316584 BSD domain containing 1 isoform c [Homo sapiens] 26 9.1
gi|221316581 BSD domain containing 1 isoform a [Homo sapiens] 26 9.1
gi|221316578 BSD domain containing 1 isoform b [Homo sapiens] 26 9.1
gi|170763513 ATP/GTP binding protein 1 [Homo sapiens] 26 9.1
>gi|32698855 hypothetical protein LOC144809 [Homo sapiens]
Length = 139
Score = 280 bits (717), Expect = 2e-76
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MGQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYNSRPQWEALQ 60
MGQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYNSRPQWEALQ
Sbjct: 1 MGQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYNSRPQWEALQ 60
Query: 61 TRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVAPQRTIPRKTSAMTRRCPSVL 120
TRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVAPQRTIPRKTSAMTRRCPSVL
Sbjct: 61 TRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVAPQRTIPRKTSAMTRRCPSVL 120
Query: 121 PVSVVLPRAQSKRRQVLRN 139
PVSVVLPRAQSKRRQVLRN
Sbjct: 121 PVSVVLPRAQSKRRQVLRN 139
>gi|156231347 hypothetical protein LOC29902 [Homo sapiens]
Length = 273
Score = 45.4 bits (106), Expect = 1e-05
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 9 QKLWNVPQLPFIRVPPSIYDTSLLKA--LNQGQQRYFYSIMRIYNSRPQWEALQTRYIHS 66
Q+LW PQ I + S+ + S K L GQ+RY SI +IYN+ ++ +Y+H
Sbjct: 78 QELWKTPQNQTIHLSKSMMEASFFKHPDLTTGQKRYLCSIAKIYNANYLKMLMKRQYMHV 137
Query: 67 LQH-QQLLGYITQREA 81
LQH Q G +T +
Sbjct: 138 LQHSSQKPGVLTHHRS 153
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 28.9 bits (63), Expect = 1.4
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 56 WEALQTRYIHS---LQHQQLLGYITQREALSYALVLRDSTKRASAKVAPQRTIPRKTSAM 112
W +L+ R I + LG ++ L ++++ K + AP RT+ R S
Sbjct: 315 WPSLRERAIRRDKPAPGTEPLGPVSSSIFLQSEEKIQEARKTRFPREAPDRTVQRARSPP 374
Query: 113 TR-RCPSVLPVSVVLPRAQSKRRQ 135
R PS +P V PR+ S RQ
Sbjct: 375 FECRIPSEVPSRAVRPRSPSPPRQ 398
>gi|21735548 centrosomal protein 2 [Homo sapiens]
Length = 2442
Score = 27.3 bits (59), Expect = 4.1
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 29 TSLLKALNQGQQRYFYSIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVL 88
T L L Q Q++ I R E L+T + ++H+ L Q E LS V+
Sbjct: 286 TELSALLTQSQKQNEDYEKMIKALRETVEILETNHTELMEHEASLSRNAQEEKLSLQQVI 345
Query: 89 RDSTK 93
+D T+
Sbjct: 346 KDITQ 350
>gi|208610019 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 26.9 bits (58), Expect = 5.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 3 QNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYN-SRPQWEA 58
+N +R ++++VP P+ YDT + + QQ YSI R Y+ +PQ +A
Sbjct: 45 RNKRRIMRIFSVPPTEETLSEPNFYDT--ISKIRLRQQLEMYSISRKYDYQQPQNQA 99
>gi|208610017 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 26.9 bits (58), Expect = 5.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 3 QNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYN-SRPQWEA 58
+N +R ++++VP P+ YDT + + QQ YSI R Y+ +PQ +A
Sbjct: 45 RNKRRIMRIFSVPPTEETLSEPNFYDT--ISKIRLRQQLEMYSISRKYDYQQPQNQA 99
>gi|208610015 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 26.9 bits (58), Expect = 5.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 3 QNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYN-SRPQWEA 58
+N +R ++++VP P+ YDT + + QQ YSI R Y+ +PQ +A
Sbjct: 45 RNKRRIMRIFSVPPTEETLSEPNFYDT--ISKIRLRQQLEMYSISRKYDYQQPQNQA 99
>gi|208610013 hypothetical protein LOC114926 [Homo sapiens]
Length = 107
Score = 26.9 bits (58), Expect = 5.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 3 QNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYN-SRPQWEA 58
+N +R ++++VP P+ YDT + + QQ YSI R Y+ +PQ +A
Sbjct: 45 RNKRRIMRIFSVPPTEETLSEPNFYDT--ISKIRLRQQLEMYSISRKYDYQQPQNQA 99
>gi|71772838 sorting nexin 22 [Homo sapiens]
Length = 193
Score = 26.6 bits (57), Expect = 7.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 6 KRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYNSRPQ 55
KR +KL+ VP P R+P + T L+ QG + Y I+ + P+
Sbjct: 52 KRIKKLYKVPDFPSKRLPN--WRTRGLEQRRQGLEAYIQGILYLNQEVPK 99
>gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens]
Length = 781
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 11 LWNVPQLPFIRVPPSIYDTSLLKALNQGQQRYFYSIMRIYN 51
LW++PQ +R S+ L A +QG YSI+ ++
Sbjct: 133 LWSLPQSDLLRGNESLLKARALVAFHQGIYPELYSILESHS 173
>gi|194306629 endoplasmic reticulum aminopeptidase 2 [Homo sapiens]
Length = 960
Score = 26.2 bits (56), Expect = 9.1
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 34 ALNQGQQRYFYSIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVLRDSTK 93
+L Q+R+ + ++ P+W ALQ RY+ + L Y T + + +L+ T
Sbjct: 558 SLRLQQERF---LQGVFQEDPEWRALQERYLWHIP----LTYSTSSSNVIHRHILKSKTD 610
Query: 94 RASAKVAPQRTIPRKTS 110
+P KTS
Sbjct: 611 TLD--------LPEKTS 619
>gi|11641261 endoplasmic reticulum aminopeptidase 2 [Homo sapiens]
Length = 960
Score = 26.2 bits (56), Expect = 9.1
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 34 ALNQGQQRYFYSIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVLRDSTK 93
+L Q+R+ + ++ P+W ALQ RY+ + L Y T + + +L+ T
Sbjct: 558 SLRLQQERF---LQGVFQEDPEWRALQERYLWHIP----LTYSTSSSNVIHRHILKSKTD 610
Query: 94 RASAKVAPQRTIPRKTS 110
+P KTS
Sbjct: 611 TLD--------LPEKTS 619
>gi|9961250 ATP-binding cassette, subfamily B, member 4 isoform B
[Homo sapiens]
Length = 1286
Score = 26.2 bits (56), Expect = 9.1
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 2 GQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQG------QQRYFYSIMRIYNSRPQ 55
GQ K+ W QL + P ++D S+ + + G Q S + N P
Sbjct: 1104 GQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPF 1163
Query: 56 WEALQTRYIHSL--QHQQLLGYITQREALSYALV 87
E L +Y + + QL G QR A++ AL+
Sbjct: 1164 IETLPHKYETRVGDKGTQLSGGQKQRIAIARALI 1197
>gi|9961252 ATP-binding cassette, subfamily B, member 4 isoform C
[Homo sapiens]
Length = 1232
Score = 26.2 bits (56), Expect = 9.1
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 2 GQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQG------QQRYFYSIMRIYNSRPQ 55
GQ K+ W QL + P ++D S+ + + G Q S + N P
Sbjct: 1050 GQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPF 1109
Query: 56 WEALQTRYIHSL--QHQQLLGYITQREALSYALV 87
E L +Y + + QL G QR A++ AL+
Sbjct: 1110 IETLPHKYETRVGDKGTQLSGGQKQRIAIARALI 1143
>gi|4505771 ATP-binding cassette, subfamily B, member 4 isoform A
[Homo sapiens]
Length = 1279
Score = 26.2 bits (56), Expect = 9.1
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 2 GQNWKRQQKLWNVPQLPFIRVPPSIYDTSLLKALNQG------QQRYFYSIMRIYNSRPQ 55
GQ K+ W QL + P ++D S+ + + G Q S + N P
Sbjct: 1097 GQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSQDEIVSAAKAANIHPF 1156
Query: 56 WEALQTRYIHSL--QHQQLLGYITQREALSYALV 87
E L +Y + + QL G QR A++ AL+
Sbjct: 1157 IETLPHKYETRVGDKGTQLSGGQKQRIAIARALI 1190
>gi|221316586 BSD domain containing 1 isoform d [Homo sapiens]
Length = 335
Score = 26.2 bits (56), Expect = 9.1
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 41 RYFYSIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVA 100
RYFY + ++ + + +AL+ R S+ + G+ + E L + S K A VA
Sbjct: 94 RYFYKVHQLEQEQARRDALKQRAEQSISEEP--GWEEEEEELMGISPI--SPKEAKVPVA 149
Query: 101 PQRTIPRKTSAMTRRCPSVLPVSVVLP 127
T P C L SV P
Sbjct: 150 KISTFPEGEPGPQSPCEENLVTSVEPP 176
>gi|221316584 BSD domain containing 1 isoform c [Homo sapiens]
Length = 374
Score = 26.2 bits (56), Expect = 9.1
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 41 RYFYSIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVA 100
RYFY + ++ + + +AL+ R S+ + G+ + E L + S K A VA
Sbjct: 133 RYFYKVHQLEQEQARRDALKQRAEQSISEEP--GWEEEEEELMGISPI--SPKEAKVPVA 188
Query: 101 PQRTIPRKTSAMTRRCPSVLPVSVVLP 127
T P C L SV P
Sbjct: 189 KISTFPEGEPGPQSPCEENLVTSVEPP 215
>gi|221316581 BSD domain containing 1 isoform a [Homo sapiens]
Length = 447
Score = 26.2 bits (56), Expect = 9.1
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 41 RYFYSIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVA 100
RYFY + ++ + + +AL+ R S+ + G+ + E L + S K A VA
Sbjct: 206 RYFYKVHQLEQEQARRDALKQRAEQSISEEP--GWEEEEEELMGISPI--SPKEAKVPVA 261
Query: 101 PQRTIPRKTSAMTRRCPSVLPVSVVLP 127
T P C L SV P
Sbjct: 262 KISTFPEGEPGPQSPCEENLVTSVEPP 288
>gi|221316578 BSD domain containing 1 isoform b [Homo sapiens]
Length = 430
Score = 26.2 bits (56), Expect = 9.1
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 41 RYFYSIMRIYNSRPQWEALQTRYIHSLQHQQLLGYITQREALSYALVLRDSTKRASAKVA 100
RYFY + ++ + + +AL+ R S+ + G+ + E L + S K A VA
Sbjct: 189 RYFYKVHQLEQEQARRDALKQRAEQSISEEP--GWEEEEEELMGISPI--SPKEAKVPVA 244
Query: 101 PQRTIPRKTSAMTRRCPSVLPVSVVLP 127
T P C L SV P
Sbjct: 245 KISTFPEGEPGPQSPCEENLVTSVEPP 271
>gi|170763513 ATP/GTP binding protein 1 [Homo sapiens]
Length = 1186
Score = 26.2 bits (56), Expect = 9.1
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 36 NQGQQRYFYSIMRIYNSRPQWEALQTRYIHSLQH 69
N G Q YS+ N+RP W + T + H
Sbjct: 737 NYGMQPLMYSVQEALNARPWWIRMGTDICYYKNH 770
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,913,475
Number of Sequences: 37866
Number of extensions: 170240
Number of successful extensions: 473
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 20
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.