Guide to the Human Genome
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Name: C8orf40 Sequence: fasta or formatted (107aa) NCBI GI: 208610019
Description:

hypothetical protein LOC114926

Not currently referenced in the text

Other entries for this name:
alt mRNA {107aa} hypothetical protein LOC114926
alt mRNA {107aa} hypothetical protein LOC114926
alt mRNA {107aa} hypothetical protein LOC114926
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          5           1
 C cysteine            0.0          0           0
 D aspartate           5.6          6           2
 E glutamate           6.5          7           2
 F phenylalanine       3.7          4           1
 G glycine             5.6          6           2
 H histidine           0.9          1           1
 I isoleucine          7.5          8           1
 K lysine              3.7          4           1
 L leucine             7.5          8           1
 M methionine          4.7          5           1
 N asparagine          4.7          5           1
 P proline             3.7          4           2
 Q glutamine           6.5          7           2
 R arginine            6.5          7           2
 S serine              8.4          9           1
 T threonine           4.7          5           1
 V valine              6.5          7           1
 W tryptophan          0.9          1           1
 Y tyrosine            7.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC114926 
C8orf40               1.000   hypothetical protein LOC114926 
C8orf40               1.000   hypothetical protein LOC114926 
C8orf40               1.000   hypothetical protein LOC114926 
FEZ2                  0.052   zygin 2 isoform 2 
FEZ2                  0.052   zygin 2 isoform 1 
TMEM43                0.036   transmembrane protein 43 
NFKBIL2               0.036   NF-kappa-B inhibitor-like protein 2 
CIB1                  0.016   calcium and integrin binding 1 
C13orf30              0.010   hypothetical protein LOC144809 
DIDO1                 0.010   death inducer-obliterator 1 isoform c 
ABT1                  0.005   activator of basal transcription 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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