Search of human proteins with 32454754

Search of human proteins with 32454754

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32454754 origin recognition complex subunit 5 isoform 2
[Homo sapiens]
         (324 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|32454754 origin recognition complex subunit 5 isoform 2 [Homo...   660   0.0  
gi|4505525 origin recognition complex subunit 5 isoform 1 [Homo ...   601   e-172
gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens]         33   0.34 
gi|29789072 zinc finger, ZZ-type containing 3 [Homo sapiens]           32   1.0  
gi|155722985 SMC5 protein [Homo sapiens]                               30   2.9  
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]                    29   5.0  
gi|120587023 down-regulated in metastasis [Homo sapiens]               29   6.5  
gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name...    29   6.5  

>gi|32454754 origin recognition complex subunit 5 isoform 2 [Homo
           sapiens]
          Length = 324

 Score =  660 bits (1704), Expect = 0.0
 Identities = 324/324 (100%), Positives = 324/324 (100%)

Query: 1   MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF 60
           MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
Sbjct: 1   MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF 60

Query: 61  VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV 120
           VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
Sbjct: 61  VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV 120

Query: 121 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP 180
           YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
Sbjct: 121 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP 180

Query: 181 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV 240
           DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
Sbjct: 181 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV 240

Query: 241 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGIRGSIET 300
           VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGIRGSIET
Sbjct: 241 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGIRGSIET 300

Query: 301 VTGDTSSANYQDTKVNTKEHSVRK 324
           VTGDTSSANYQDTKVNTKEHSVRK
Sbjct: 301 VTGDTSSANYQDTKVNTKEHSVRK 324


>gi|4505525 origin recognition complex subunit 5 isoform 1 [Homo
           sapiens]
          Length = 435

 Score =  601 bits (1550), Expect = e-172
 Identities = 293/294 (99%), Positives = 294/294 (100%)

Query: 1   MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF 60
           MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF
Sbjct: 1   MPHLENVVLCRESQVSILQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHVF 60

Query: 61  VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV 120
           VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV
Sbjct: 61  VNCVECFTLRLLLEQILNKLNHLSSSEDGCSTEITCETFNDFVRLFKQVTTAENLKDQTV 120

Query: 121 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP 180
           YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP
Sbjct: 121 YIVLDKAEYLRDMEANLLPGFLRLQELADRNVTVLFLSEIVWEKFRPNTGCFEPFVLYFP 180

Query: 181 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV 240
           DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV
Sbjct: 181 DYSIGNLQKILSHDHPPEYSADFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPV 240

Query: 241 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGI 294
           VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKG+
Sbjct: 241 VKGEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGL 294


>gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens]
          Length = 633

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 32  SIFIYGHTASGKTYVTQTLLKTLELPHVFVNC 63
           +I + G T SGKT + QTL K L++P    +C
Sbjct: 288 NILLLGPTGSGKTLLAQTLAKCLDVPFAICDC 319


>gi|29789072 zinc finger, ZZ-type containing 3 [Homo sapiens]
          Length = 903

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 22/116 (18%)

Query: 80  LNHLSSSEDGCSTEITCETFND------------------FVRLFKQVTTAENLKDQTVY 121
           + HL S+++  S  IT E  +D                  + RL + +   E  + Q V 
Sbjct: 463 IGHLPSAKESASQHITEEEDDDPDVYYFESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQ 522

Query: 122 IVLDKAEYLRDMEANLLPGFLRLQELADRNVT----VLFLSEIVWEKFRPNTGCFE 173
            +     + R+   N +    +LQ+ AD  +     V+ L EIVW+++  + G FE
Sbjct: 523 DLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVVQLPEIVWDQYTHSLGNFE 578


>gi|155722985 SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 11/122 (9%)

Query: 199 YSADFYAAYINILLGVFYTVCRDLKELRHL--AVLNFPKYCEPVVKGEASERDTRKLWRN 256
           YS    ++  ++ +  F TV  DL++ RHL   +    +  + V  G  + R+T K   +
Sbjct: 626 YSNKVISSNTSLKVAQFLTVTVDLEQRRHLEEQLKEIHRKLQAVDSGLIALRETSKHLEH 685

Query: 257 IEPHLKKAMQTVYLREISSSQWEKLQKDDTDPGQLKGIRGSIETVTGDTSSANYQDTKVN 316
            +  L++  + +  R+    Q E+         ++    GS++ +  DT +   ++ K +
Sbjct: 686 KDNELRQKKKELLERKTKKRQLEQ---------KISSKLGSLKLMEQDTCNLEEEERKAS 736

Query: 317 TK 318
           TK
Sbjct: 737 TK 738


>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
          Length = 1780

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 9/110 (8%)

Query: 33  IFIYGHTASGKTYVTQTLLKTLELPHVFVNCVECFTLRLLLEQILNKLN---HLSSSEDG 89
           IF YG T SGKTY  Q   + + +    +N +       L E++  K+N   H S     
Sbjct: 148 IFTYGLTNSGKTYTFQGTEENIGILPRTLNVL----FDSLQERLYTKMNLKPHRSREYLR 203

Query: 90  CSTEITCETFNDFVRLFKQV--TTAENLKDQTVYIVLDKAEYLRDMEANL 137
            S+E   E       L +Q+   T  N  D T+Y  L  +  + + E ++
Sbjct: 204 LSSEQEKEEIASKSALLRQIKEVTVHNDSDDTLYGSLTNSLNISEFEESI 253


>gi|120587023 down-regulated in metastasis [Homo sapiens]
          Length = 2785

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 222 LKELRHLAVLNFPKYCEPVVK---GEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQW 278
           L+ L  +  +NF    +PV++     A E + ++ W+    HL+KA         ++   
Sbjct: 721 LRYLLGMLYINFSALWDPVIELISSHAHEMENKQFWKVYYEHLEKA---------ATHAE 771

Query: 279 EKLQKDDTDPGQLKGIRGSIETVTGDTSSANYQDTKVNT 317
           ++LQ D TD   + G     +T  GD  +  ++   + T
Sbjct: 772 KELQNDMTDEKSV-GDESWEQTQEGDVGALYHEQLALKT 809


>gi|89036565 PREDICTED: similar to Temporarily Assigned Gene name
           family member (tag-184) [Homo sapiens]
          Length = 2785

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 222 LKELRHLAVLNFPKYCEPVVK---GEASERDTRKLWRNIEPHLKKAMQTVYLREISSSQW 278
           L+ L  +  +NF    +PV++     A E + ++ W+    HL+KA         ++   
Sbjct: 721 LRYLLGMLYINFSALWDPVIELISSHAHEMENKQFWKVYYEHLEKA---------ATHAE 771

Query: 279 EKLQKDDTDPGQLKGIRGSIETVTGDTSSANYQDTKVNT 317
           ++LQ D TD   + G     +T  GD  +  ++   + T
Sbjct: 772 KELQNDMTDEKSV-GDESWEQTQEGDVGALYHEQLALKT 809


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,160,541
Number of Sequences: 37866
Number of extensions: 506415
Number of successful extensions: 1341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 12
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.