Search of human proteins with 31563424

Search of human proteins with 31563424

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31563424 chemokine-like factor superfamily 1 isoform 12
[Homo sapiens]
         (28 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo...    60   4e-10
gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Hom...    58   1e-09
gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Hom...    58   1e-09
gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo ...    58   1e-09
gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo ...    58   1e-09
gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo ...    58   1e-09
gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo ...    58   1e-09
gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo ...    58   1e-09

>gi|31563424 chemokine-like factor superfamily 1 isoform 12 [Homo
          sapiens]
          Length = 28

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 28/28 (100%), Positives = 28/28 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAALR 28
          MDPEHAKPESSEAPSGNLKQPETAAALR
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAALR 28


>gi|148743778 chemokine-like factor superfamily 1 isoform 14 [Homo
          sapiens]
          Length = 231

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27
          MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27


>gi|148743783 chemokine-like factor superfamily 1 isoform 13 [Homo
          sapiens]
          Length = 286

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27
          MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27


>gi|31563394 chemokine-like factor superfamily 1 isoform 2 [Homo
          sapiens]
          Length = 114

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27
          MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27


>gi|31563398 chemokine-like factor superfamily 1 isoform 4 [Homo
          sapiens]
          Length = 116

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27
          MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27


>gi|31563396 chemokine-like factor superfamily 1 isoform 3 [Homo
          sapiens]
          Length = 122

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27
          MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27


>gi|31563402 chemokine-like factor superfamily 1 isoform 5 [Homo
          sapiens]
          Length = 61

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27
          MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27


>gi|31563392 chemokine-like factor superfamily 1 isoform 1 [Homo
          sapiens]
          Length = 169

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)

Query: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27
          MDPEHAKPESSEAPSGNLKQPETAAAL
Sbjct: 1  MDPEHAKPESSEAPSGNLKQPETAAAL 27


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.297    0.115    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,383,042
Number of Sequences: 37866
Number of extensions: 27310
Number of successful extensions: 46
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 8
length of query: 28
length of database: 18,247,518
effective HSP length: 3
effective length of query: 25
effective length of database: 18,133,920
effective search space: 453348000
effective search space used: 453348000
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.