Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 31542785
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542785 sec1 family domain containing 2 [Homo sapiens]
(684 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542785 sec1 family domain containing 2 [Homo sapiens] 1354 0.0
gi|4507297 syntaxin binding protein 1 isoform a [Homo sapiens] 38 0.027
gi|73760415 syntaxin binding protein 1 isoform b [Homo sapiens] 35 0.23
gi|209976994 adenylate cyclase 10 [Homo sapiens] 33 1.1
gi|118600975 syntaxin binding protein 3 [Homo sapiens] 33 1.1
gi|190885497 Rho guanine nucleotide exchange factor 3 isoform 2 ... 32 2.5
gi|190885495 Rho guanine nucleotide exchange factor 3 isoform 1 ... 32 2.5
gi|9506401 Rho guanine nucleotide exchange factor 3 isoform 3 [H... 32 2.5
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H... 31 3.3
gi|109255241 natural resistance-associated macrophage protein 1 ... 31 4.3
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 30 5.7
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 30 5.7
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 30 5.7
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 30 5.7
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 30 5.7
gi|207028821 RNA binding motif protein 44 [Homo sapiens] 30 5.7
gi|18105056 vacuolar protein sorting 33A [Homo sapiens] 30 7.4
gi|39930602 TATA box binding protein like 2 [Homo sapiens] 30 7.4
>gi|31542785 sec1 family domain containing 2 [Homo sapiens]
Length = 684
Score = 1354 bits (3504), Expect = 0.0
Identities = 684/684 (100%), Positives = 684/684 (100%)
Query: 1 MSASGVLSFTQQGWEQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFE 60
MSASGVLSFTQQGWEQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFE
Sbjct: 1 MSASGVLSFTQQGWEQVLAKVKRAVVYLDAACAESLHWGCGSTRLLEAVGGPDCHLREFE 60
Query: 61 PDAIGGGAKQPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPA 120
PDAIGGGAKQPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPA
Sbjct: 61 PDAIGGGAKQPKAVFVLSCLLKGRTVEILRDIICRSHFQYCVVVTTVSHAVHLTANHVPA 120
Query: 121 AAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLL 180
AAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLL
Sbjct: 121 AAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLL 180
Query: 181 PQDVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVG 240
PQDVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVG
Sbjct: 181 PQDVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEHLGVREECFAVG 240
Query: 241 SLSQVIAADLANYAPAKNRKKTAAGRASVVFVDRTLDLTGAVGHHGDNLVEKIISALPQL 300
SLSQVIAADLANYAPAKNRKKTAAGRASVVFVDRTLDLTGAVGHHGDNLVEKIISALPQL
Sbjct: 241 SLSQVIAADLANYAPAKNRKKTAAGRASVVFVDRTLDLTGAVGHHGDNLVEKIISALPQL 300
Query: 301 PGHTNDVMVNMIALTALHTEEENYNVVAPGCLSQSSDTTAKALWEALLNTKHKEAVMEVR 360
PGHTNDVMVNMIALTALHTEEENYNVVAPGCLSQSSDTTAKALWEALLNTKHKEAVMEVR
Sbjct: 301 PGHTNDVMVNMIALTALHTEEENYNVVAPGCLSQSSDTTAKALWEALLNTKHKEAVMEVR 360
Query: 361 RHLVEAASRENLPIKMSMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHP 420
RHLVEAASRENLPIKMSMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHP
Sbjct: 361 RHLVEAASRENLPIKMSMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHP 420
Query: 421 QTAKWDNFLAFERLLLQSIGESAMSVVLNQLLPMIKPVTQRTNEDYSPEELLILLIYIYS 480
QTAKWDNFLAFERLLLQSIGESAMSVVLNQLLPMIKPVTQRTNEDYSPEELLILLIYIYS
Sbjct: 421 QTAKWDNFLAFERLLLQSIGESAMSVVLNQLLPMIKPVTQRTNEDYSPEELLILLIYIYS 480
Query: 481 VTGELTVDKDLCEAEEKVKKALAQVFCEESGLSPLLQKITDWDSSINLTFHKSKIAVDEL 540
VTGELTVDKDLCEAEEKVKKALAQVFCEESGLSPLLQKITDWDSSINLTFHKSKIAVDEL
Sbjct: 481 VTGELTVDKDLCEAEEKVKKALAQVFCEESGLSPLLQKITDWDSSINLTFHKSKIAVDEL 540
Query: 541 FTSLRDIAGARSLLKQFKSVYVPGNHTHQASYKPLLKQVVEEIFHPERPDSVDIEHMSSG 600
FTSLRDIAGARSLLKQFKSVYVPGNHTHQASYKPLLKQVVEEIFHPERPDSVDIEHMSSG
Sbjct: 541 FTSLRDIAGARSLLKQFKSVYVPGNHTHQASYKPLLKQVVEEIFHPERPDSVDIEHMSSG 600
Query: 601 LTDLLKTGFSMFMKVSRPHPSDYPLLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLST 660
LTDLLKTGFSMFMKVSRPHPSDYPLLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLST
Sbjct: 601 LTDLLKTGFSMFMKVSRPHPSDYPLLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLST 660
Query: 661 RLLKPLNIPELLFATDRLHPDLGF 684
RLLKPLNIPELLFATDRLHPDLGF
Sbjct: 661 RLLKPLNIPELLFATDRLHPDLGF 684
>gi|4507297 syntaxin binding protein 1 isoform a [Homo sapiens]
Length = 603
Score = 38.1 bits (87), Expect = 0.027
Identities = 82/357 (22%), Positives = 147/357 (41%), Gaps = 75/357 (21%)
Query: 343 LWEALLNTKHKEAVMEVRRHLVEAASRENLPIKMSMGRVTP----GQLMSYIQLFKNNLK 398
LW AL + E EV R L + +S + +M+ G T Q++ + ++ L
Sbjct: 287 LWIALRHKHIAEVSQEVTRSLKDFSSSK----RMNTGEKTTMRDLSQMLKKMPQYQKELS 342
Query: 399 ALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQSIGESAMSVVLNQLLPMIKPV 458
H L + +KH Q D E+ L ++G A + + I P+
Sbjct: 343 KYSTHLHLAE------DCMKHYQGTV-DKLCRVEQDL--AMGTDAEGEKIKDPMRAIVPI 393
Query: 459 TQRTNEDYSPEELLILLIYIYSVTGELTVDKDLCEAEEKVKKAL--AQVFCEESGLSPLL 516
N + +++ I+L+YI+ G EE + K + AQ+ E+S +
Sbjct: 394 LLDANVS-TYDKIRIILLYIFLKNGI---------TEENLNKLIQHAQIPPEDSEI---- 439
Query: 517 QKITDWDSSINLTFHKSKIAVDELFTSLRDIAGARSLLKQFKSVYVPGNHTHQAS-YKPL 575
IT N+ I D ++LR RS ++ + + T+Q S + P+
Sbjct: 440 --IT------NMAHLGVPIVTD---STLR----RRSKPERKERI---SEQTYQLSRWTPI 481
Query: 576 LKQVVEEIFHPERPDSVDIEHM--------SSGLTDLLKTGFSMFMKVSRPHPSDY---P 624
+K ++E+ D +D +H +S T + + + K P +Y P
Sbjct: 482 IKDIMEDTIE----DKLDTKHYPYISTRSSASFSTTAVSARYGHWHK--NKAPGEYRSGP 535
Query: 625 LLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLLKPLNIPELLFATDRLHPD 681
LI+F++GGV+++E++ + V +V++ ST +L P F D HPD
Sbjct: 536 RLIIFILGGVSLNEMRCAYE-VTQANGKWEVLIGSTHILTPTK-----FLMDLRHPD 586
>gi|73760415 syntaxin binding protein 1 isoform b [Homo sapiens]
Length = 594
Score = 35.0 bits (79), Expect = 0.23
Identities = 78/348 (22%), Positives = 145/348 (41%), Gaps = 70/348 (20%)
Query: 343 LWEALLNTKHKEAVMEVRRHLVEAASRENLPIKMSMGRVTP----GQLMSYIQLFKNNLK 398
LW AL + E EV R L + +S + +M+ G T Q++ + ++ L
Sbjct: 287 LWIALRHKHIAEVSQEVTRSLKDFSSSK----RMNTGEKTTMRDLSQMLKKMPQYQKELS 342
Query: 399 ALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQSIGESAMSVVLNQLLPMIKPV 458
H L + +KH Q D E+ L ++G A + + I P+
Sbjct: 343 KYSTHLHLAE------DCMKHYQGTV-DKLCRVEQDL--AMGTDAEGEKIKDPMRAIVPI 393
Query: 459 TQRTNEDYSPEELLILLIYIYSVTGELTVDKDLCEAEEKVKKAL--AQVFCEESGLSPLL 516
N + +++ I+L+YI+ G EE + K + AQ+ E+S +
Sbjct: 394 LLDANVS-TYDKIRIILLYIFLKNGI---------TEENLNKLIQHAQIPPEDSEI---- 439
Query: 517 QKITDWDSSINLTFHKSKIAVDELFTSLRDIAGARSLLKQFKSVYVPGNHTHQAS-YKPL 575
IT N+ I D ++LR RS ++ + + T+Q S + P+
Sbjct: 440 --IT------NMAHLGVPIVTD---STLR----RRSKPERKERI---SEQTYQLSRWTPI 481
Query: 576 LKQVVEEIFHPERPDSVDIEHM--------SSGLTDLLKTGFSMFMKVSRPHPSDY---P 624
+K ++E+ D +D +H +S T + + + K P +Y P
Sbjct: 482 IKDIMEDTIE----DKLDTKHYPYISTRSSASFSTTAVSARYGHWHK--NKAPGEYRSGP 535
Query: 625 LLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLLKPLNIPELL 672
LI+F++GGV+++E++ + V +V++ ST +L P + + L
Sbjct: 536 RLIIFILGGVSLNEMRCAYE-VTQANGKWEVLIGSTHILTPQKLLDTL 582
>gi|209976994 adenylate cyclase 10 [Homo sapiens]
Length = 1610
Score = 32.7 bits (73), Expect = 1.1
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 385 QLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHPQTAKWDNFLAFERLLLQSIGESAM 444
+ + +I ++NN + L H GLL LGL ++ + + + +WDNF F + M
Sbjct: 1398 ECLEFIHQYENN-RILKFHSGLL-LGLYSSVAIWYARLQEWDNFYKFSNRAKNLLPRRTM 1455
Query: 445 SVVL---------NQLLPMIKPVTQRT-NEDYSPEELL 472
++ Q+L + K + +++ N S EELL
Sbjct: 1456 TLTYYDGISRYMEGQVLHLQKQIKEQSENAQASGEELL 1493
>gi|118600975 syntaxin binding protein 3 [Homo sapiens]
Length = 592
Score = 32.7 bits (73), Expect = 1.1
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 626 LILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLLKP 665
LI+FV+GG+T SEV+ + V+ +VI+ ST +L P
Sbjct: 531 LIVFVIGGITYSEVRCAYE-VSQAHKSCEVIIGSTHVLTP 569
>gi|190885497 Rho guanine nucleotide exchange factor 3 isoform 2
[Homo sapiens]
Length = 532
Score = 31.6 bits (70), Expect = 2.5
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 125 EMEGQQPVFE--QLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLLPQ 182
E++ Q+ +FE Q EE L E ++ + +H P+L + L F +L L+P
Sbjct: 126 EIKRQEAIFELSQGEEDLIE---DLKLAKKAYHDPMLKLSIMTEQELNQIFGTLDSLIPL 182
Query: 183 DVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEH 229
LL+ R ++ GS V P L+ + CL S S C +
Sbjct: 183 HEELLSQLRDVRKPDGSTEHVG-----PILVGWLPCL-SSYDSYCSN 223
>gi|190885495 Rho guanine nucleotide exchange factor 3 isoform 1
[Homo sapiens]
Length = 558
Score = 31.6 bits (70), Expect = 2.5
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 125 EMEGQQPVFE--QLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLLPQ 182
E++ Q+ +FE Q EE L E ++ + +H P+L + L F +L L+P
Sbjct: 152 EIKRQEAIFELSQGEEDLIE---DLKLAKKAYHDPMLKLSIMTEQELNQIFGTLDSLIPL 208
Query: 183 DVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEH 229
LL+ R ++ GS V P L+ + CL S S C +
Sbjct: 209 HEELLSQLRDVRKPDGSTEHVG-----PILVGWLPCL-SSYDSYCSN 249
>gi|9506401 Rho guanine nucleotide exchange factor 3 isoform 3 [Homo
sapiens]
Length = 526
Score = 31.6 bits (70), Expect = 2.5
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 125 EMEGQQPVFE--QLEEKLCEWMGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLFPLLPQ 182
E++ Q+ +FE Q EE L E ++ + +H P+L + L F +L L+P
Sbjct: 120 EIKRQEAIFELSQGEEDLIE---DLKLAKKAYHDPMLKLSIMTEQELNQIFGTLDSLIPL 176
Query: 183 DVHLLNSARPDKRKLGSLGDVDSTTLTPELLLQIRCLVSGLSSLCEH 229
LL+ R ++ GS V P L+ + CL S S C +
Sbjct: 177 HEELLSQLRDVRKPDGSTEHVG-----PILVGWLPCL-SSYDSYCSN 217
>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
sapiens]
Length = 4515
Score = 31.2 bits (69), Expect = 3.3
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 16/178 (8%)
Query: 377 SMGRVTPGQLMSYIQLFKNNLKALMNHCGLLQLGLATAQTLKHPQTAKW--DNFLAFERL 434
SMG +T + + + F+N + ++N ++G+ +L + DN +
Sbjct: 734 SMGELTSKEFEAILNRFRNYFRHIVNMAIEKRIGIFNVVSLDYQSECLLYIDNVIHMSHT 793
Query: 435 LLQSIGESAMSVVLNQLLPMIKPVTQRTNEDYSP-EELLILLIYIYSVTGELT-VDKDLC 492
L+QS+ E LL +++ Q+ D + EE L I++ +++ +++ ++K+
Sbjct: 794 LIQSVIEKKN----KNLLEVVESSLQQLECDPTEIEEFLEHFIFLNAISSKISKLEKEFL 849
Query: 493 EAEEKVKKAL-AQVFCEESGLS---PLLQKITDWDSSINLTFHKSKIAVDELFTSLRD 546
+ A Q+ E ++ LL K + SS+ L SKI D T RD
Sbjct: 850 TMSQLYSVAKHHQIHISEEQIAIFQVLLLKFSQLKSSMKL----SKINKDTAITKFRD 903
>gi|109255241 natural resistance-associated macrophage protein 1
[Homo sapiens]
Length = 550
Score = 30.8 bits (68), Expect = 4.3
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 39 GCGSTRLLEAVGGPDCHLREFEPDAIGGGAKQPKAVFVLSCLLKGRTVEILRDIICRSHF 98
GCG LL+AVG I G P +++ S L+K R ++ R R
Sbjct: 235 GCGHPELLQAVG-------------IVGAIIMPHNIYLHSALVKSREIDRARRADIREAN 281
Query: 99 QYCVVVTTVSHAVHLTAN 116
Y ++ T++ +V N
Sbjct: 282 MYFLIEATIALSVSFIIN 299
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 103 VVTTVSHAVHL-TANHVPAAAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLA 161
V T H + L T H+PA + ++ G VF +C M V H+P+ A
Sbjct: 119 VTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYA 178
Query: 162 PVAPHFALTP 171
P + P
Sbjct: 179 AFPPLISSDP 188
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 103 VVTTVSHAVHL-TANHVPAAAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLA 161
V T H + L T H+PA + ++ G VF +C M V H+P+ A
Sbjct: 119 VTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYA 178
Query: 162 PVAPHFALTP 171
P + P
Sbjct: 179 AFPPLISSDP 188
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 103 VVTTVSHAVHL-TANHVPAAAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLA 161
V T H + L T H+PA + ++ G VF +C M V H+P+ A
Sbjct: 152 VTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYA 211
Query: 162 PVAPHFALTP 171
P + P
Sbjct: 212 AFPPLISSDP 221
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 103 VVTTVSHAVHL-TANHVPAAAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLA 161
V T H + L T H+PA + ++ G VF +C M V H+P+ A
Sbjct: 119 VTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYA 178
Query: 162 PVAPHFALTP 171
P + P
Sbjct: 179 AFPPLISSDP 188
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 30.4 bits (67), Expect = 5.7
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 103 VVTTVSHAVHL-TANHVPAAAAAEMEGQQPVFEQLEEKLCEWMGNMNYTAEVFHVPLLLA 161
V T H + L T H+PA + ++ G VF +C M V H+P+ A
Sbjct: 202 VTTVAPHGIPLCTGQHIPACSTQQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYA 261
Query: 162 PVAPHFALTP 171
P + P
Sbjct: 262 AFPPLISSDP 271
>gi|207028821 RNA binding motif protein 44 [Homo sapiens]
Length = 1052
Score = 30.4 bits (67), Expect = 5.7
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 459 TQRTNEDYSPEELLILLIYIYSVTGELTVDKDLCEAEEKVKKALAQV-----FCEESGLS 513
+Q + SP+++L + IY ++ ++ KD C + K L + ++ L
Sbjct: 310 SQSKSGSLSPQKVLKMKIYTENMKSQINEGKDFCGNKIVENKILLHLENPSTLPQDKALE 369
Query: 514 PLLQKITDWDSSINLTFHKSKIAVDELFTSLRDIA 548
LLQ D +S F S I+ + SL++ A
Sbjct: 370 TLLQPCKDCQTSWTSVFDDSIISACGYYESLQNTA 404
>gi|18105056 vacuolar protein sorting 33A [Homo sapiens]
Length = 596
Score = 30.0 bits (66), Expect = 7.4
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 620 PSDYPLLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLL 663
P + + ++F +GGVT +E+ ++ L GT+ ++ +T+L+
Sbjct: 539 PGENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLM 582
>gi|39930602 TATA box binding protein like 2 [Homo sapiens]
Length = 375
Score = 30.0 bits (66), Expect = 7.4
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 144 MGNMNYTAEVFHVPLLLAPVAPHFALTPAFASLF-PLLPQDVHLLNSARPD--------- 193
+G + E ++ L L A L P + LF P++P D+++LN++ PD
Sbjct: 28 VGLRSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAFNSNPEV 87
Query: 194 KRKLGSLGDVDSTTLTPEL 212
K G VD + L E+
Sbjct: 88 KETSGDFSSVDLSFLPDEV 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,873,157
Number of Sequences: 37866
Number of extensions: 1044769
Number of successful extensions: 2469
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2465
Number of HSP's gapped (non-prelim): 22
length of query: 684
length of database: 18,247,518
effective HSP length: 109
effective length of query: 575
effective length of database: 14,120,124
effective search space: 8119071300
effective search space used: 8119071300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.