Guide to the Human Genome
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Search of human proteins with 29336077

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]
         (457 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]                 912   0.0  
gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens]                808   0.0  
gi|45580709 unc-93 homolog B1 [Homo sapiens]                          120   3e-27
gi|13236549 major facilitator superfamily domain containing 11 [...    86   7e-17
gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo ...    59   7e-09
gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans...    47   4e-05
gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans...    47   4e-05
gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans...    45   1e-04
gi|22749525 major facilitator superfamily domain containing 8 [H...    34   0.32 
gi|34101290 Fas apoptotic inhibitory molecule 2 [Homo sapiens]         31   2.0  
gi|12232393 major facilitator superfamily domain containing 1 [H...    31   2.0  
gi|4502455 bombesin-like receptor 3 [Homo sapiens]                     31   2.0  
gi|144953907 major facilitator superfamily domain containing 6 [...    31   2.7  
gi|5902148 uroplakin 1A [Homo sapiens]                                 29   7.8  

>gi|29336077 unc-93 homolog A isoform 1 [Homo sapiens]
          Length = 457

 Score =  912 bits (2357), Expect = 0.0
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MDRSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPL 60
           MDRSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPL
Sbjct: 1   MDRSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPL 60

Query: 61  LIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGN 120
           LIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGN
Sbjct: 61  LIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGN 120

Query: 121 THAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGAS 180
           THAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGAS
Sbjct: 121 THAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGAS 180

Query: 181 DCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVP 240
           DCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVP
Sbjct: 181 DCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVP 240

Query: 241 FWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFS 300
           FWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFS
Sbjct: 241 FWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFS 300

Query: 301 ATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVA 360
           ATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVA
Sbjct: 301 ATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVA 360

Query: 361 DAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSL 420
           DAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSL
Sbjct: 361 DAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSL 420

Query: 421 TMVAYGLVECVESKNPIRPHAPGQVNQAEDEEIQTKM 457
           TMVAYGLVECVESKNPIRPHAPGQVNQAEDEEIQTKM
Sbjct: 421 TMVAYGLVECVESKNPIRPHAPGQVNQAEDEEIQTKM 457


>gi|221139828 unc-93 homolog A isoform 2 [Homo sapiens]
          Length = 415

 Score =  808 bits (2088), Expect = 0.0
 Identities = 415/457 (90%), Positives = 415/457 (90%), Gaps = 42/457 (9%)

Query: 1   MDRSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPL 60
           MDRSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPL
Sbjct: 1   MDRSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPL 60

Query: 61  LIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGN 120
           LIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGN
Sbjct: 61  LIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGN 120

Query: 121 THAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGAS 180
           THAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQ              
Sbjct: 121 THAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQ-------------- 166

Query: 181 DCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVP 240
                                       GSGVLAVLMIAAFLQPIRDVQRESEGEKKSVP
Sbjct: 167 ----------------------------GSGVLAVLMIAAFLQPIRDVQRESEGEKKSVP 198

Query: 241 FWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFS 300
           FWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFS
Sbjct: 199 FWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFS 258

Query: 301 ATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVA 360
           ATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVA
Sbjct: 259 ATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRADHLAVFFVFSGLWGVA 318

Query: 361 DAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSL 420
           DAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSL
Sbjct: 319 DAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSL 378

Query: 421 TMVAYGLVECVESKNPIRPHAPGQVNQAEDEEIQTKM 457
           TMVAYGLVECVESKNPIRPHAPGQVNQAEDEEIQTKM
Sbjct: 379 TMVAYGLVECVESKNPIRPHAPGQVNQAEDEEIQTKM 415


>gi|45580709 unc-93 homolog B1 [Homo sapiens]
          Length = 597

 Score =  120 bits (301), Expect = 3e-27
 Identities = 115/461 (24%), Positives = 192/461 (41%), Gaps = 50/461 (10%)

Query: 5   LRNVLVVSFGFLLLFTAYGGLQSLQSSL-----YSEEGLGVTALSTLYGGMLL------- 52
           L+NVL  S G +L +  Y GL  +Q  L     Y E   G   L  +   ML+       
Sbjct: 61  LKNVLAASAGGMLTYGVYLGLLQMQLILHYDETYREVKYGNMGLPDIDSKMLMGINVTPI 120

Query: 53  SSMFLPPLLIERLGCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQC 112
           +++   P+LI   G K  + L++  Y  F   N++  +YTL+P+++ LG+   PLW++  
Sbjct: 121 AALLYTPVLIRFFGTKWMMFLAVGIYALFVSTNYWERYYTLVPSAVALGMAIVPLWASMG 180

Query: 113 TYLTITGNTHAEKAGKRGKDMVNQ---------------YFGIFFLIFQSSGVWGNL--I 155
            Y+T     + E +  + +D                   +  IF+  F  S     L  I
Sbjct: 181 NYITRMAQKYHEYSHYKEQDGQGMKQRPPRGSHAPYLLVFQAIFYSFFHLSFACAQLPMI 240

Query: 156 SSLVFGQTPSQETLPEEQLTSCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAV 215
             L         TL   Q     +   L     T     P    +  +  +      LA+
Sbjct: 241 YFLNHYLYDLNHTLYNVQSCGTNSHGILSGFNKTVLRTLPRSGNLIVVESVLMAVAFLAM 300

Query: 216 LMI----AAFLQPIRDVQRESEGEKKSVPFWSTLLST-FKLYRDKRLCLLILLPLYSGLQ 270
           L++     A  +P  ++   S G       W  +    FK  RD RL  L+   +YSG +
Sbjct: 301 LLVLGLCGAAYRPTEEIDLRSVG-------WGNIFQLPFKHVRDYRLRHLVPFFIYSGFE 353

Query: 271 QGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTH 330
             F  +     Y  C++G++ + Y+++ +S   +  S+L G +  +  R V  V GA  H
Sbjct: 354 VLFACTGIALGYGVCSVGLERLAYLLVAYSLGASAASLL-GLLGLWLPRPVPLVAGAGVH 412

Query: 331 VSCMIALLLWRP---RADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFE--KSKEAAFA 385
           +     L  W P      H  + +V + LWGV  A+ +T  + L G+L+E  + ++  F 
Sbjct: 413 LLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYEDKERQDFIFT 472

Query: 386 NYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTMVAY 425
            Y  W+A+  F +  G S+ +    KL +LL  L    V+Y
Sbjct: 473 IYHWWQAVAIFTVYLGSSLHM--KAKLAVLLVTLVAAAVSY 511


>gi|13236549 major facilitator superfamily domain containing 11
           [Homo sapiens]
          Length = 449

 Score = 85.9 bits (211), Expect = 7e-17
 Identities = 100/445 (22%), Positives = 188/445 (42%), Gaps = 63/445 (14%)

Query: 3   RSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSE------EGLGVTALSTLYGGMLLSSMF 56
           + L N++++   F+ +FTA+    ++  ++          G G T+++ +YG +  +S  
Sbjct: 6   KKLFNIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYG-VFSASNL 64

Query: 57  LPPLLIERLGCKGTIILS---MCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCT 113
           + P ++  +G + ++  S      Y+A  +  F  S+YT    S+ +G+ AA LW+AQ  
Sbjct: 65  ITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYT---ASVFIGIAAAVLWTAQGN 121

Query: 114 YLTITGNTHAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVF-GQTPSQETLPEE 172
            LTI  + H+          + +  GIF+ + QSS  +GNL     + G+T         
Sbjct: 122 CLTINSDEHS----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKT--------- 162

Query: 173 QLTSCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRES 232
           Q++        +A T  +        LV T+L           ++        +D++   
Sbjct: 163 QISESDRRTVFIALTVIS--------LVGTVLFFLIRKPDSENVLGEDESSDDQDMEVNE 214

Query: 233 EGEKKSVPFWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEY-TRSYVTCTLGIQ- 290
             +            +FKL   K + LL +   Y+GL+  F S  Y T    T   G + 
Sbjct: 215 SAQNNLTKAVDAFKKSFKLCVTKEMLLLSITTAYTGLELTFFSGVYGTCIGATNKFGAEE 274

Query: 291 --FVGYVMICFSATDALCSVLYGKVSQYT--GRAVLYVLGAVTHVSCMIALLLWRPRADH 346
              +G   I     + L   L+G +S+    GR  + +LG + H      + L  P    
Sbjct: 275 KSLIGLSGIFIGIGEILGGSLFGLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAP 334

Query: 347 LA----------------VFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLW 390
           +A                V  + S L G+ D+ + TQ  ++ G L+ +    AFA ++  
Sbjct: 335 IAPVKGTDSSAYIKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFV 394

Query: 391 EALGFVIAFGYSMFLCVHVKLYILL 415
           +++   +AF YS +L +H +L +++
Sbjct: 395 QSICAAVAFFYSNYLLLHWQLLVMV 419


>gi|239747143 PREDICTED: hypothetical protein XP_002343924 [Homo
           sapiens]
          Length = 319

 Score = 59.3 bits (142), Expect = 7e-09
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 9/152 (5%)

Query: 280 RSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCMIALLL 339
           + Y  C++G++++ Y+++ +S   +  S+L G +  +  R V  V GA  H+     L  
Sbjct: 3   QGYGVCSVGLEWLAYLLVPYSLGASATSLL-GLLGLWLPRPVPLVAGAGVHLLLTFILFF 61

Query: 340 WRPRA---DHLAVFFVFSGLWGVADAVWQTQNNALYGVLFE--KSKEAAFANYRLWEALG 394
           W P      H  + +V + LW V  ++ +T  + L G+L+E  + ++  F  Y  W+A+ 
Sbjct: 62  WAPVPRVLQHSWILYVAAALWVVGSSLNKTGLSTLLGILYEDKERQDFIFTIYHWWQAVA 121

Query: 395 -FVIAFGYSMFLCVHVKLYILLGVLSLTMVAY 425
            F +  G S+ +    KL +LL  L    V+Y
Sbjct: 122 IFTVYLGSSLHM--KAKLALLLVTLVAATVSY 151


>gi|239755577 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
           [Homo sapiens]
          Length = 312

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 309 LYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQ 365
           L G +  +  R V  V GA  H+     L  W P      H  +  V + LWGV  A+  
Sbjct: 12  LLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNN 71

Query: 366 TQNNALYGVLF--EKSKEAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTM 422
           T  + L G+L+  ++ ++  F  Y  W+A+  F +  G S+ +    KL +LL  L    
Sbjct: 72  TGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAA 129

Query: 423 VAY 425
           V+Y
Sbjct: 130 VSY 132


>gi|239750109 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
           [Homo sapiens]
          Length = 529

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 309 LYGKVSQYTGRAVLYVLGAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQ 365
           L G +  +  R V  V GA  H+     L  W P      H  +  V + LWGV  A+  
Sbjct: 12  LLGLLGLWLPRPVPLVAGAGVHLLLTFILFFWAPVPRVLQHSWILCVAAALWGVGSALNN 71

Query: 366 TQNNALYGVLF--EKSKEAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTM 422
           T  + L G+L+  ++ ++  F  Y  W+A+  F +  G S+ +    KL +LL  L    
Sbjct: 72  TGLSTLLGILYKDKERQDFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAA 129

Query: 423 VAY 425
           V+Y
Sbjct: 130 VSY 132


>gi|239744415 PREDICTED: similar to unc-93 homolog B1 (C. elegans)
           [Homo sapiens]
          Length = 503

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 326 GAVTHVSCMIALLLWRPRA---DHLAVFFVFSGLWGVADAVWQTQNNALYGVLFE--KSK 380
           GA  H+     L  W P      H+ +  V + LWGV  A+  T  + L G+L+E  + +
Sbjct: 3   GAGVHLLLTFILFFWAPVPRVLQHIWILCVAAALWGVGSALNNTGLSTLLGILYEDKERQ 62

Query: 381 EAAFANYRLWEALG-FVIAFGYSMFLCVHVKLYILLGVLSLTMVAY 425
           +  F  Y  W+A+  F +  G S+ +    KL +LL  L    V+Y
Sbjct: 63  DFIFTIYHWWQAVAIFTVYLGSSLHM--KAKLAMLLVTLVAAAVSY 106


>gi|22749525 major facilitator superfamily domain containing 8 [Homo
           sapiens]
          Length = 518

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 3/114 (2%)

Query: 286 TLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAVTHV--SCMIALLLWRPR 343
           T    F+G+V+  +S    + S ++G  S Y  R    ++  +  V  +C+ A  L  P 
Sbjct: 70  TADTSFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYA-YLHIPA 128

Query: 344 ADHLAVFFVFSGLWGVADAVWQTQNNALYGVLFEKSKEAAFANYRLWEALGFVI 397
           + +     V  GL G+         +   G    + + ++ AN  + +ALGF++
Sbjct: 129 SHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFIL 182


>gi|34101290 Fas apoptotic inhibitory molecule 2 [Homo sapiens]
          Length = 316

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 22/115 (19%)

Query: 200 VYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFKLYRDKRLC- 258
           VYT+L I      LAV+ +  F  P++D  + + G      +W++    F  Y     C 
Sbjct: 106 VYTILLIQL-LVTLAVVALFTFCDPVKDYVQANPGW-----YWASYAVFFATYLTLACCS 159

Query: 259 -----------LLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSAT 302
                      LL +  L      G LSS Y  + V   LGI      ++C S T
Sbjct: 160 GPRRHFPWNLILLTVFTLSMAYLTGMLSSYYNTTSVLLCLGIT----ALVCLSVT 210


>gi|12232393 major facilitator superfamily domain containing 1 [Homo
           sapiens]
          Length = 465

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 84/362 (23%), Positives = 145/362 (40%), Gaps = 70/362 (19%)

Query: 3   RSLRNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSM---FLPP 59
           R L  +L+   GF   F  Y    +LQ+ +  +  +  T    LY      ++   F   
Sbjct: 42  RLLVLLLMCFLGFGSYF-CYDNPAALQTQVKRDMQVNTTKFMLLYAWYSWPNVVLCFFGG 100

Query: 60  LLIERL-GCK-GTIILS--MC-GYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTY 114
            LI+R+ G + GTII S  +C G V F++G  F +++ +     + G+G   L  AQ TY
Sbjct: 101 FLIDRVFGIRWGTIIFSCFVCIGQVVFALGGIFNAFWLMEFGRFVFGIGGESLAVAQNTY 160

Query: 115 LTITGNTHAEKAGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQL 174
                      +  +GK++ N  FG+      S    G+ ++  + G   S+    E  L
Sbjct: 161 AV---------SWFKGKEL-NLVFGLQL----SMARIGSTVNMNLMGWLYSK---IEALL 203

Query: 175 TSCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEG 234
            S G        TT   T          + G+     ++  L +A   Q    +  + +G
Sbjct: 204 GSAG-------HTTLGIT--------LMIGGVTCILSLICALALAYLDQRAERILHKEQG 248

Query: 235 EKK-----------SVPFWSTLLSTFKLYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYV 283
           +             S+P W   +          +C  + +  + GL + F + ++  S  
Sbjct: 249 KTGEVIKLTDVKDFSLPLWLIFIIC--------VCYYVAVFPFIGLGKVFFTEKFGFSSQ 300

Query: 284 TCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTGRAVLYVLGAV--THVS-CMIALLLW 340
             +  I  V YV+       A  S ++G +   TG+ +++VL AV  T VS  M+A  +W
Sbjct: 301 AAS-AINSVVYVI------SAPMSPVFGLLVDKTGKNIIWVLCAVAATLVSHMMLAFTMW 353

Query: 341 RP 342
            P
Sbjct: 354 NP 355


>gi|4502455 bombesin-like receptor 3 [Homo sapiens]
          Length = 399

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 140 IFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGASDCLMATT 187
           I + +  S G+ GN I   VF +T S +T+P   +TS    D L+  T
Sbjct: 52  ITYAVIISVGILGNAILIKVFFKTKSMQTVPNIFITSLAFGDLLLLLT 99


>gi|144953907 major facilitator superfamily domain containing 6
           [Homo sapiens]
          Length = 791

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 11  VSFGFLLLFT-AYGGLQSLQSSLYSEEGLGVTAL----STLYGGMLLSSMFLPPLLIERL 65
           + FG+  +FT  Y  L+ L          G T L    S L     L++ F    LIE +
Sbjct: 457 MGFGYGFVFTFLYWHLEDLN---------GTTTLFGVCSVLSHVSELTAYFFSHKLIELI 507

Query: 66  GCKGTIILSM-CGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLT 116
           G    + + + C    +   ++  + +T++P  +L G+  A +W+A  +YL+
Sbjct: 508 GHIRVLYIGLACNTARYIYISYLENAWTVLPMEVLQGVTHAAIWAACISYLS 559


>gi|5902148 uroplakin 1A [Homo sapiens]
          Length = 258

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 349 VFFVFSGLWGVADAVWQTQNN-ALYGVLFEKSKEAAFANYRLWEALGF----VIAFGYSM 403
           +  + SGL   A+ +W T +   +Y ++    K+  FA   +    GF    V +FG   
Sbjct: 25  IIILLSGLSLFAETIWVTADQYRVYPLMGVSGKDDVFAGAWIAIFCGFSFFMVASFGVGA 84

Query: 404 FLCVHVKLYILLGVLSLTMVAYGLVECVES 433
            LC    + +   VL L +  +    C+ S
Sbjct: 85  ALCRRRSMVLTYLVLMLIVYIFECASCITS 114


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,846,971
Number of Sequences: 37866
Number of extensions: 636672
Number of successful extensions: 1805
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1790
Number of HSP's gapped (non-prelim): 18
length of query: 457
length of database: 18,247,518
effective HSP length: 106
effective length of query: 351
effective length of database: 14,233,722
effective search space: 4996036422
effective search space used: 4996036422
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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