Search of human proteins with 28872784

Search of human proteins with 28872784

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28872784 CDK5 regulatory subunit associated protein 1
isoform b [Homo sapiens]
         (497 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28872784 CDK5 regulatory subunit associated protein 1 isoform...   982   0.0  
gi|28872782 CDK5 regulatory subunit associated protein 1 isoform...   982   0.0  
gi|93277076 CDK5 regulatory subunit associated protein 1-like 1 ...   121   1e-27
gi|143770880 laminin, beta 4 [Homo sapiens]                            33   0.46 
gi|32698724 patatin-like phospholipase domain containing 2 [Homo...    33   0.78 
gi|30179909 paired immunoglobulin-like type 2 receptor alpha iso...    30   6.6  
gi|30179907 paired immunoglobulin-like type 2 receptor alpha iso...    30   6.6  
gi|30179905 paired immunoglobulin-like type 2 receptor alpha iso...    30   6.6  

>gi|28872784 CDK5 regulatory subunit associated protein 1 isoform b
           [Homo sapiens]
          Length = 497

 Score =  982 bits (2539), Expect = 0.0
 Identities = 497/497 (100%), Positives = 497/497 (100%)

Query: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60
           MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK
Sbjct: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60

Query: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120
           AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD
Sbjct: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120

Query: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT 180
           LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT
Sbjct: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT 180

Query: 181 RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN 240
           RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN
Sbjct: 181 RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN 240

Query: 241 YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS 300
           YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS
Sbjct: 241 YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS 300

Query: 301 GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV 360
           GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV
Sbjct: 301 GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV 360

Query: 361 QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV 420
           QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV
Sbjct: 361 QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV 420

Query: 421 LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL 480
           LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL
Sbjct: 421 LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL 480

Query: 481 RGHVLCRTTLRDSSAYC 497
           RGHVLCRTTLRDSSAYC
Sbjct: 481 RGHVLCRTTLRDSSAYC 497


>gi|28872782 CDK5 regulatory subunit associated protein 1 isoform a
           [Homo sapiens]
          Length = 587

 Score =  982 bits (2539), Expect = 0.0
 Identities = 497/497 (100%), Positives = 497/497 (100%)

Query: 1   MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 60
           MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK
Sbjct: 91  MMDELLGRQRKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREK 150

Query: 61  AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 120
           AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD
Sbjct: 151 AEQTIWNRLHQLKALKTRRPRSRVPLRIGILGCMAERLKEEILNREKMVDILAGPDAYRD 210

Query: 121 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT 180
           LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT
Sbjct: 211 LPRLLAVAESGQQAANVLLSLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPFT 270

Query: 181 RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN 240
           RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN
Sbjct: 271 RGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTTN 330

Query: 241 YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS 300
           YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS
Sbjct: 331 YKTKQGGLRFAHLLDQVSRVDPEMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQS 390

Query: 301 GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV 360
           GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV
Sbjct: 391 GSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLLREV 450

Query: 361 QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV 420
           QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV
Sbjct: 451 QYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVGCTQLV 510

Query: 421 LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL 480
           LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL
Sbjct: 511 LVEGLSKRSATDLCGRNDGNLKVIFPDAEMEDVNNPGLRVRAQPGDYVLVKITSASSQTL 570

Query: 481 RGHVLCRTTLRDSSAYC 497
           RGHVLCRTTLRDSSAYC
Sbjct: 571 RGHVLCRTTLRDSSAYC 587


>gi|93277076 CDK5 regulatory subunit associated protein 1-like 1
           [Homo sapiens]
          Length = 579

 Score =  121 bits (304), Expect = 1e-27
 Identities = 104/427 (24%), Positives = 201/427 (47%), Gaps = 62/427 (14%)

Query: 10  RKVYLETYGCQMNVNDTEIAWSILQKSGYLRTSNLQEADVILLVTCSIREKAEQTIWNRL 69
           +K+++ T+GC  N +D E     L   GY  T N  +AD+ LL +C+++  AE       
Sbjct: 64  QKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAED------ 117

Query: 70  HQLKALKTRRPRSRVPLRIGILGCMAE-RLKEEILNREKMVDILAGPDAYRDLPRLLAVA 128
           H   ++K  +  ++   +I + GC+ + + +++ L    ++ +       + + R++ V 
Sbjct: 118 HFRNSIKKAQEENK---KIVLAGCVPQAQPRQDYLKGLSIIGV-------QQIDRVVEVV 167

Query: 129 ESGQQAANVLL---------SLDETYADVMPVQTSASATSAFVSIMRGCDNMCSYCIVPF 179
           E   +  +V L          L     D+  ++ +       +SI  GC N C+YC    
Sbjct: 168 EETIKGHSVRLLGQKKDNGRRLGGARLDLPKIRKNPLIE--IISINTGCLNACTYCKTKH 225

Query: 180 TRGRERSRPIASILEEVKKLSEQGLKEVTLLGQNVNSFRDNSEVQFNSAVPTNLSRGFTT 239
            RG   S PI  +++  K+  ++G+ E+ L  ++  ++                 R   T
Sbjct: 226 ARGNLASYPIDELVDRAKQSFQEGVCEIWLTSEDTGAY----------------GRDIGT 269

Query: 240 NYKTKQGGLRFAHLLDQVSRVDPE---MRIRFTSP-HPKDFPDEVLQLIHERDNICKQIH 295
           N  T         LL ++  V PE   +R+  T+P +  +  +E+ ++++    +   +H
Sbjct: 270 NLPT---------LLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNH-PRVYAFLH 319

Query: 296 LPAQSGSSRVLEAMRRGYSREAYVELVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVS 355
           +P QS S  VL  M+R Y    +  +V  ++E +PG+++++D I GF GET++D  +TV 
Sbjct: 320 IPVQSASDSVLMEMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVK 379

Query: 356 LLREVQYNMGFLFAYSMRQKTRAYHRLKDDVPEEVKLRRLEELITIFREEATKANQTSVG 415
           L+ E ++   F+  +  R  T A     + VP +VK +R ++L  +F   +   ++  +G
Sbjct: 380 LVEEYKFPSLFINQFYPRPGTPA--AKMEQVPAQVKKQRTKDLSRVFHSYSPYDHK--IG 435

Query: 416 CTQLVLV 422
             Q VLV
Sbjct: 436 ERQQVLV 442


>gi|143770880 laminin, beta 4 [Homo sapiens]
          Length = 1761

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 123  RLLAVAESGQQAANVLLSLDETYADVMPVQ-TSASATSAFVSIMRGCDNMCSYCIVPFTR 181
            +LL  A++ ++AAN+LL+LD+T   +   Q T   A S    +      +    +    +
Sbjct: 1551 KLLVKAKAAEKAANILLNLDKTLNQLQQAQITQGRANSTITQLTANITKIKKNVL----Q 1606

Query: 182  GRERSRPIASILEEVKKLS--EQGLKEVTLLGQNVNSFRDNSEVQFNSA 228
               ++R + S LE  K+ S  E GL  +    Q       N++VQ  SA
Sbjct: 1607 AENQTREMKSELELAKQRSGLEDGLSLLQTKLQRHQDHAVNAKVQAESA 1655


>gi|32698724 patatin-like phospholipase domain containing 2 [Homo
           sapiens]
          Length = 504

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 29/213 (13%)

Query: 213 NVNSFR-DNSEVQFNSAVPTNLSRGF------TTNYKTKQG---GLRFAHLLDQVSRVDP 262
           N++  R  N+ +QFN      LS+              KQG   GLRF      ++R +P
Sbjct: 201 NIHELRVTNTSIQFNLRNLYRLSKALFPPEPLVLREMCKQGYRDGLRFLQRNGLLNRPNP 260

Query: 263 EMRIRFTSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVE-- 320
            + +    PH  +  D+ ++     D       LP +      L A       EA VE  
Sbjct: 261 LLALPPARPHGPEDKDQAVESAQAED----YSQLPGEDHILEHLPARLNEALLEACVEPT 316

Query: 321 -LVHHIRESIPGVSLSSDFIAGFCGETEEDHVQTVSLL----------REVQYNMGFLFA 369
            L+  +   +P V L++  +  +    E     T+ LL          R ++   G +  
Sbjct: 317 DLLTTLSNMLP-VRLATAMMVPYTLPLESALSFTIRLLEWLPDVPEDIRWMKEQTGSICQ 375

Query: 370 YS-MRQKTRAYHRLKDDVPEEVKLRRLEELITI 401
           Y  MR K +    L   +PE+V+LRR++ L ++
Sbjct: 376 YLVMRAKRKLGRHLPSRLPEQVELRRVQSLPSV 408


>gi|30179909 paired immunoglobulin-like type 2 receptor alpha
           isoform 1 precursor [Homo sapiens]
          Length = 303

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 23  VNDTEIAWSILQKSGYLRTSNLQEAD 48
           VN   + W+  QKSG+LR SNLQ+ D
Sbjct: 94  VNRLFLNWTEGQKSGFLRISNLQKQD 119


>gi|30179907 paired immunoglobulin-like type 2 receptor alpha
           isoform 3 precursor [Homo sapiens]
          Length = 175

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 23  VNDTEIAWSILQKSGYLRTSNLQEAD 48
           VN   + W+  QKSG+LR SNLQ+ D
Sbjct: 94  VNRLFLNWTEGQKSGFLRISNLQKQD 119


>gi|30179905 paired immunoglobulin-like type 2 receptor alpha
           isoform 2 precursor [Homo sapiens]
          Length = 230

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 23  VNDTEIAWSILQKSGYLRTSNLQEAD 48
           VN   + W+  QKSG+LR SNLQ+ D
Sbjct: 94  VNRLFLNWTEGQKSGFLRISNLQKQD 119


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,282,213
Number of Sequences: 37866
Number of extensions: 716779
Number of successful extensions: 1794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1785
Number of HSP's gapped (non-prelim): 8
length of query: 497
length of database: 18,247,518
effective HSP length: 106
effective length of query: 391
effective length of database: 14,233,722
effective search space: 5565385302
effective search space used: 5565385302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.