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Search of human proteins with 28557729
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28557729 hypothetical protein LOC283687 [Homo sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28557729 hypothetical protein LOC283687 [Homo sapiens] 271 1e-73
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 42 2e-04
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 42 2e-04
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 42 2e-04
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 42 2e-04
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 42 2e-04
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 42 2e-04
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 42 2e-04
gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens] 40 7e-04
gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens] 40 7e-04
gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens] 39 9e-04
gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens] 39 9e-04
gi|38348332 killer cell lectin-like receptor subfamily G, member... 37 0.004
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 37 0.006
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 37 0.006
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.006
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 36 0.008
gi|195963410 MEF2 activating motif and SAP domain containing tra... 36 0.010
gi|32698970 MEF2 activating motif and SAP domain containing tran... 36 0.010
gi|13699803 WAS protein family, member 3 [Homo sapiens] 36 0.010
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 35 0.013
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|219802034 nuclear factor related to kappaB binding protein is... 35 0.017
gi|23346420 nuclear factor related to kappaB binding protein iso... 35 0.017
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 35 0.022
gi|38787970 tensin like C1 domain containing phosphatase isoform... 35 0.022
gi|38787957 tensin like C1 domain containing phosphatase isoform... 35 0.022
gi|38787941 tensin like C1 domain containing phosphatase isoform... 35 0.022
gi|169168341 PREDICTED: hypothetical protein [Homo sapiens] 34 0.029
gi|113417273 PREDICTED: hypothetical protein [Homo sapiens] 34 0.029
>gi|28557729 hypothetical protein LOC283687 [Homo sapiens]
Length = 130
Score = 271 bits (692), Expect = 1e-73
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MPRPASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATS 60
MPRPASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATS
Sbjct: 1 MPRPASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATS 60
Query: 61 PVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQPRPAP 120
PVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQPRPAP
Sbjct: 61 PVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQPRPAP 120
Query: 121 GAHQLSSPSS 130
GAHQLSSPSS
Sbjct: 121 GAHQLSSPSS 130
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
P+ P QP PEGP + A + L PP PT PS A P VP +
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP-APPAVPPAAS 323
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSS 127
P + + P G PAQP P HQ S
Sbjct: 324 PVMPPQTQSP------------GQPAQPAPMVPLHQKQS 350
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
P+ P QP PEGP + A + L PP PT PS A P VP +
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP-APPAVPPAAS 323
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSS 127
P + + P G PAQP P HQ S
Sbjct: 324 PVMPPQTQSP------------GQPAQPAPMVPLHQKQS 350
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
P+ P QP PEGP + A + L PP PT PS A P VP +
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP-APPAVPPAAS 323
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSS 127
P + + P G PAQP P HQ S
Sbjct: 324 PVMPPQTQSP------------GQPAQPAPMVPLHQKQS 350
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
P+ P QP PEGP + A + L PP PT PS A P VP +
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP-APPAVPPAAS 323
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSS 127
P + + P G PAQP P HQ S
Sbjct: 324 PVMPPQTQSP------------GQPAQPAPMVPLHQKQS 350
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
P+ P QP PEGP + A + L PP PT PS A P VP +
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP-APPAVPPAAS 323
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSS 127
P + + P G PAQP P HQ S
Sbjct: 324 PVMPPQTQSP------------GQPAQPAPMVPLHQKQS 350
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
P+ P QP PEGP + A + L PP PT PS A P VP +
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP-APPAVPPAAS 323
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSS 127
P + + P G PAQP P HQ S
Sbjct: 324 PVMPPQTQSP------------GQPAQPAPMVPLHQKQS 350
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
P+ P QP PEGP + A + L PP PT PS A P VP +
Sbjct: 265 PSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP-APPAVPPAAS 323
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSS 127
P + + P G PAQP P HQ S
Sbjct: 324 PVMPPQTQSP------------GQPAQPAPMVPLHQKQS 350
>gi|144953880 hypothetical protein LOC54838 isoform 2 [Homo sapiens]
Length = 342
Score = 39.7 bits (91), Expect = 7e-04
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 17/125 (13%)
Query: 17 PAYKA--VSHLRLLPTANSPSGSNQP-TNPNRAQH--PEGPQSREGATSPVLASLEPPTP 71
P Y A + +LLP P+G + P +P R P S +S S+ P P
Sbjct: 120 PPYSAFQLQQQQLLPPQCGPAGGSPPGIDPTRGSQGAQSSPLSEPSRSSTRPPSIADPDP 179
Query: 72 TDLPSARARPRVP-----------AESGPG-WLHKARRPTRGILRDVLRHRGVPAQPRPA 119
+DLP RA + P E PG +L K +L+D G P
Sbjct: 180 SDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECREELLKDDSSEHGAPDSKEKT 239
Query: 120 PGAHQ 124
PG H+
Sbjct: 240 PGRHR 244
>gi|144953882 hypothetical protein LOC54838 isoform 1 [Homo sapiens]
Length = 363
Score = 39.7 bits (91), Expect = 7e-04
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 17/125 (13%)
Query: 17 PAYKA--VSHLRLLPTANSPSGSNQP-TNPNRAQH--PEGPQSREGATSPVLASLEPPTP 71
P Y A + +LLP P+G + P +P R P S +S S+ P P
Sbjct: 141 PPYSAFQLQQQQLLPPQCGPAGGSPPGIDPTRGSQGAQSSPLSEPSRSSTRPPSIADPDP 200
Query: 72 TDLPSARARPRVP-----------AESGPG-WLHKARRPTRGILRDVLRHRGVPAQPRPA 119
+DLP RA + P E PG +L K +L+D G P
Sbjct: 201 SDLPVDRAATKAPGMEPSGSVAGLGELDPGAFLDKDAECREELLKDDSSEHGAPDSKEKT 260
Query: 120 PGAHQ 124
PG H+
Sbjct: 261 PGRHR 265
>gi|63082035 hypothetical protein LOC51149 isoform 2 [Homo sapiens]
Length = 288
Score = 39.3 bits (90), Expect = 9e-04
Identities = 38/118 (32%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 4 PASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGP----------- 52
P E WSPIQ + L P +S S QP + R P GP
Sbjct: 156 PGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQ 215
Query: 53 QSREGATSPVLASLEPPTPTDLPSARARP--------RVP-AESGPGWLHKAR-RPTR 100
SREG + P A P + S RP R P AE GP L RPTR
Sbjct: 216 ASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTR 273
>gi|63082033 hypothetical protein LOC51149 isoform 1 [Homo sapiens]
Length = 343
Score = 39.3 bits (90), Expect = 9e-04
Identities = 38/118 (32%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 4 PASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGP----------- 52
P E WSPIQ + L P +S S QP + R P GP
Sbjct: 211 PGKELWSPIQQVTATSSKWAQFVLPPRKSSHVDSEQPRSLQRDPRPAGPAQAKQGTPRAQ 270
Query: 53 QSREGATSPVLASLEPPTPTDLPSARARP--------RVP-AESGPGWLHKAR-RPTR 100
SREG + P A P + S RP R P AE GP L RPTR
Sbjct: 271 ASREGLSRPTAAVQLPRATHPVTSGSERPCGKTSWDARTPWAEGGPLVLEAQNPRPTR 328
>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
[Homo sapiens]
Length = 409
Score = 37.0 bits (84), Expect = 0.004
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 7 ESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVL--- 63
ESW P +A + L + P + QP P + + PEGP+S V
Sbjct: 3 ESWEAA----PGGQAGAELPMEPVGSLVPTLEQPQVPAKVRQPEGPESSPSPAGAVEKAA 58
Query: 64 -ASLEPPTPTDLPSAR-ARPRVPAES-GPGWLHKARRPTRGILRDVLRHRGVPAQPRPAP 120
A LEP + PS R PRVP S G G + P +++ L G PAP
Sbjct: 59 GAGLEPSSKKKPPSPRPGSPRVPPLSLGYGVCPEPPSPGPALVK--LPRNGEAPGAEPAP 116
Query: 121 GA 122
A
Sbjct: 117 SA 118
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 36.6 bits (83), Expect = 0.006
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 31 ANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESGPG 90
A P + NPN AQ E T+PV + PP P + SA P ES PG
Sbjct: 158 AGPPPCTAPGANPNNAQVTGALLQSESGTAPVWSKSTPPAPDNGTSAWGEPN---ESSPG 214
Query: 91 W 91
W
Sbjct: 215 W 215
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 36.6 bits (83), Expect = 0.006
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 19 YKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSAR 78
Y++ + + P + G+ + A P + T +A PTP L S R
Sbjct: 494 YRSTTGTAIAPNLGALGGNRSAARTDIAPTPGALRGYRSWTRRAIA----PTPGTLSSYR 549
Query: 79 ARPRVPAESGPGWL-------HKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLS 126
+R R S P L H + PT G LRD LR P + AP LS
Sbjct: 550 SRSRRTIASTPATLRGEKSRAHTSLAPTPGALRDALRRDRSPVRRAIAPTPGTLS 604
Score = 33.9 bits (76), Expect = 0.037
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 10 SPIQSRIPAYKAV----------SHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGAT 59
+P R PA +A+ S + PT +P G + P N A P T
Sbjct: 1223 APRIDRSPACRAIAPTPGALGDDSSTAIAPTPGTPRGDSSPANTAIASTPGALHGDTSQT 1282
Query: 60 SPVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRP 98
+A PTP DL + PG LH R P
Sbjct: 1283 HKAIA----PTPGDLGGGSSSAHKAIAPSPGALHGDRSP 1317
Score = 27.3 bits (59), Expect = 3.5
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 10 SPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSR-EGATSPVLASLEP 68
+P + +Y++ S + T + G + + A P + SPV ++ P
Sbjct: 539 APTPGTLSSYRSRSRRTIASTPATLRGEKSRAHTSLAPTPGALRDALRRDRSPVRRAIAP 598
Query: 69 PTPTDLPSARARPRVPAESGPGWLHKAR-RPTRGILRDVLRHRGVPAQPR----PAPGA 122
TP L R+R R PG L R R R I RG ++ PAPGA
Sbjct: 599 -TPGTLSGYRSRARTAIAPTPGTLRGYRPRSRRAIASTPATLRGEKSRAHTSLAPAPGA 656
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 36.6 bits (83), Expect = 0.006
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 34 PSGSNQPTNP-----NRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESG 88
PS PT+P + + P P +REGA +P L PP T + +A + G
Sbjct: 1396 PSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGG 1455
Query: 89 PGWLHKARRPTRGILRDVLRHRGVPAQPRPAPGAHQLSSPSS 130
P PT + P P+ P Q+++ SS
Sbjct: 1456 PATPSSKGDPTLPAV--------TPPSPKEPPAPKQVATSSS 1489
Score = 31.2 bits (69), Expect = 0.24
Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 2 PRPASESWSPIQSRI-PAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATS 60
P + S SP ++R PA K + P + SP G+ PT P A P P+ S
Sbjct: 909 PALSMTSSSPKKARATPAPKGI------PASPSPKGA--PTPP--AATPPSPKGGPATPS 958
Query: 61 PVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQPRP-- 118
P A PP T PS + P P+ G A P+ +G PA P P
Sbjct: 959 PKWAP-TPPAATP-PSPKGGPATPSPKGAPTPPAATPPS---------PKGGPATPSPKG 1007
Query: 119 APGAHQLSSPS 129
AP ++ PS
Sbjct: 1008 APTPPAVTPPS 1018
Score = 30.0 bits (66), Expect = 0.54
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 29 PTANSPSGSNQPT----NPNRAQHPEGPQSREGATSPVLA-------SLEPPTP---TDL 74
P PS PT P+ P P S+EG T P ++ PP+P +
Sbjct: 1336 PAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAI 1395
Query: 75 PSARARPRVPA 85
PS + P PA
Sbjct: 1396 PSPKGDPTSPA 1406
Score = 28.5 bits (62), Expect = 1.6
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 29 PTANSPSGSNQP---TNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPA 85
P + P G+ P T P+ P P + T P + PP+P P+ A +
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT---PPSPKGTPTLPA-TTPSS 1356
Query: 86 ESGPGWLHKARRPTRGILRDVLRHRGVPAQPRPAP 120
+ GP PT H+G PA P+P
Sbjct: 1357 KGGPTTPSSKEGPTPPAATP--SHKGGPAMTPPSP 1389
Score = 28.1 bits (61), Expect = 2.1
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Query: 2 PRPASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGP-----QSRE 56
P P + S + PA A LP S P P+ + P P +
Sbjct: 1479 PAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKT 1538
Query: 57 GATSPVLASLEPPTPTDLPSARARPRVP 84
AT +L PP T +PS + P +P
Sbjct: 1539 PATLAPKEALIPPAMT-VPSPKKTPAIP 1565
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 29 PTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPR 82
P SP G+ P GP + +P ++ PP+P P+A P+
Sbjct: 977 PATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPK 1030
Score = 26.9 bits (58), Expect = 4.6
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 17 PAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPS 76
PA VS L+ P ++P G P P+ P P T P + EPP P + +
Sbjct: 1436 PAVTPVS-LKKAPATSAPKGG--PATPSSKGDPTLP----AVTPP--SPKEPPAPKQVAT 1486
Query: 77 ARARPRVPAESGP 89
+ + + PA P
Sbjct: 1487 SSSPKKAPATPAP 1499
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 36.2 bits (82), Expect = 0.008
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 2 PRPASESWSPIQSRIPAYKAV-----SHLRLLPTANSPSGSNQPTNPNRAQ----HPEGP 52
P+P S Q P V SH P +P+ +++P PNRA +P+ P
Sbjct: 1166 PKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYYPQTP 1225
Query: 53 QSREGATSPVLASLEP 68
+R +T P SL P
Sbjct: 1226 NNRPPSTEPSEISLSP 1241
Score = 26.2 bits (56), Expect = 7.8
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 4 PASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVL 63
PAS SP + R+P N+P GSN + + E PQ+ + +
Sbjct: 1085 PASVPPSPDKQRMPM-----------PVNTPLGSNS----RKMVYQESPQNPSSSPLAEM 1129
Query: 64 ASLEPPTPTDLPSARARP 81
ASL + ++ PS P
Sbjct: 1130 ASLPEASGSEAPSVPGGP 1147
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 35.8 bits (81), Expect = 0.010
Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 26 RLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPA 85
RL P A + + P+ A H P A +P A P PT P+ A P +
Sbjct: 227 RLKPKALAAARRQGSVKPSAASHR--PPLPRAADTPGTA----PAPTPTPAPAAAPALTP 280
Query: 86 ESGPG--------WLHKARR-----PTRGILRDVLRHRGVPAQPRPA-----PGAHQLSS 127
SGPG L +A R P RGI D+L + P P P PG+ + S
Sbjct: 281 SSGPGSAALTLEEELQEAIRRAQLLPNRGI-DDILEDQVEPDDPLPPIPLDFPGSFDVLS 339
Query: 128 PS 129
PS
Sbjct: 340 PS 341
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 35.8 bits (81), Expect = 0.010
Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 25/122 (20%)
Query: 26 RLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPA 85
RL P A + + P+ A H P A +P A P PT P+ A P +
Sbjct: 124 RLKPKALAAARRQGSVKPSAASHR--PPLPRAADTPGTA----PAPTPTPAPAAAPALTP 177
Query: 86 ESGPG--------WLHKARR-----PTRGILRDVLRHRGVPAQPRPA-----PGAHQLSS 127
SGPG L +A R P RGI D+L + P P P PG+ + S
Sbjct: 178 SSGPGSAALTLEEELQEAIRRAQLLPNRGI-DDILEDQVEPDDPLPPIPLDFPGSFDVLS 236
Query: 128 PS 129
PS
Sbjct: 237 PS 238
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 35.8 bits (81), Expect = 0.010
Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 24/133 (18%)
Query: 2 PRPASESWSPIQSRIPAYKAVSHLRLLPTA----NSPSGSNQPTNPNRAQHPEGPQSREG 57
P P +P S+ A A + +LP +PSG P P P P ++
Sbjct: 304 PPPPPPPQAPEGSQASAPMAPADYGMLPAQIIEYYNPSGPPPPPPP-----PVIPSAQTA 358
Query: 58 ATSPVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQP- 116
SP+ ++PP P S A P P P+ G+L G P P
Sbjct: 359 FVSPLQMPMQPPFPASASSTHAAPPHP-------------PSTGLLVTAPPPPGPPPPPP 405
Query: 117 -RPAPGAHQLSSP 128
P PG+ SSP
Sbjct: 406 GPPGPGSSLSSSP 418
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 35.4 bits (80), Expect = 0.013
Identities = 28/91 (30%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 34 PSGSNQPTNPNRAQHPEGPQSREGATSPVLA-SLEPPTPTDLPSARARPRVPAESGPGWL 92
P+ + P P + P P P L SL PP P LP P PA SGP
Sbjct: 218 PAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPGP 277
Query: 93 HKARRPTRGILRDVLRHRGVPAQPRPAPGAH 123
+ P G+ H P PA G H
Sbjct: 278 PQLPPPAPGV------HPPAPVVHPPASGVH 302
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 35.0 bits (79), Expect = 0.017
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 4 PASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPE-----GPQSREGA 58
PA +Q P + + P + PSG + +RA E G R G
Sbjct: 165 PARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAGHRAATAEHQLGAGFSVRNGP 224
Query: 59 TSPVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTR 100
P PP P P ARP P GPG L P+R
Sbjct: 225 GPPARL---PPAPPGPPLRPARPHNPTSRGPGRLLTCEPPSR 263
>gi|219802034 nuclear factor related to kappaB binding protein
isoform 1 [Homo sapiens]
Length = 1299
Score = 35.0 bits (79), Expect = 0.017
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
Query: 6 SESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSR----EGATSP 61
S+S P P L +P + P + + P+ P S T P
Sbjct: 711 SDSSMPPTPVTPVTPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMP 770
Query: 62 VLAS-LEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQPRP-A 119
L + L P + PS++A RV + SG L + R + L V + G PAQ P
Sbjct: 771 HLGTMLSPASSQTAPSSQAAARVVSHSGSAGLSQVRVVAQPSLPAVPQQSGGPAQTLPQM 830
Query: 120 PGAHQLSSPSS 130
P Q+ P++
Sbjct: 831 PAGPQIRVPAT 841
>gi|23346420 nuclear factor related to kappaB binding protein
isoform 2 [Homo sapiens]
Length = 1324
Score = 35.0 bits (79), Expect = 0.017
Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
Query: 6 SESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSR----EGATSP 61
S+S P P L +P + P + + P+ P S T P
Sbjct: 736 SDSSMPPTPVTPVTPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMP 795
Query: 62 VLAS-LEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQPRP-A 119
L + L P + PS++A RV + SG L + R + L V + G PAQ P
Sbjct: 796 HLGTMLSPASSQTAPSSQAAARVVSHSGSAGLSQVRVVAQPSLPAVPQQSGGPAQTLPQM 855
Query: 120 PGAHQLSSPSS 130
P Q+ P++
Sbjct: 856 PAGPQIRVPAT 866
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 34.7 bits (78), Expect = 0.022
Identities = 34/120 (28%), Positives = 42/120 (35%), Gaps = 5/120 (4%)
Query: 2 PRPASESWSPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSP 61
PRP S + S LR T GS+QP++ R + E S + P
Sbjct: 254 PRPCSFGQPDVGSAPSRSLRGCSLRFRNTPPPIPGSDQPSSHGRPRFRETGDSED--CPP 311
Query: 62 VLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDVLRHRGVPAQPRPAPG 121
A P PT S P+ +GP W RP R PA RP PG
Sbjct: 312 FRAGTPPQQPTAPSSEWPGPQRSPGTGPRWTAPLPRPAP---LPAKRPGDSPASKRPRPG 368
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 34.7 bits (78), Expect = 0.022
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 10 SPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNR----AQHPEGPQSREGATSPVLAS 65
SP+ + +P + +SP GS P++ PE PQS P+ AS
Sbjct: 879 SPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAFPLAAS 938
Query: 66 LEPP--TPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDV----LRHRGVPAQPRP 118
+ + LP R P + GP +A P RGI V L VP P P
Sbjct: 939 YDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGISHHVTFAPLLSDNVPQTPEP 997
Score = 26.9 bits (58), Expect = 4.6
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 26 RLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSAR------- 78
RL P P S T + P G A SPV + P +P+D P R
Sbjct: 815 RLSPGEALPPVSQAGTG-KAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSD 873
Query: 79 -ARPRVPAESG-PGWLHKARRPTRG 101
A PR P + PG H + RG
Sbjct: 874 GASPRSPVPTTLPGLRHAPWQGPRG 898
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 34.7 bits (78), Expect = 0.022
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 10 SPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNR----AQHPEGPQSREGATSPVLAS 65
SP+ + +P + +SP GS P++ PE PQS P+ AS
Sbjct: 1003 SPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAFPLAAS 1062
Query: 66 LEPP--TPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDV----LRHRGVPAQPRP 118
+ + LP R P + GP +A P RGI V L VP P P
Sbjct: 1063 YDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGISHHVTFAPLLSDNVPQTPEP 1121
Score = 26.9 bits (58), Expect = 4.6
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 26 RLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSAR------- 78
RL P P S T + P G A SPV + P +P+D P R
Sbjct: 939 RLSPGEALPPVSQAGTG-KAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSD 997
Query: 79 -ARPRVPAESG-PGWLHKARRPTRG 101
A PR P + PG H + RG
Sbjct: 998 GASPRSPVPTTLPGLRHAPWQGPRG 1022
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 34.7 bits (78), Expect = 0.022
Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 10/119 (8%)
Query: 10 SPIQSRIPAYKAVSHLRLLPTANSPSGSNQPTNPNR----AQHPEGPQSREGATSPVLAS 65
SP+ + +P + +SP GS P++ PE PQS P+ AS
Sbjct: 1013 SPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAFPLAAS 1072
Query: 66 LEPP--TPTDLPSARARPRVPAESGPGWLHKARRPTRGILRDV----LRHRGVPAQPRP 118
+ + LP R P + GP +A P RGI V L VP P P
Sbjct: 1073 YDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGISHHVTFAPLLSDNVPQTPEP 1131
Score = 26.9 bits (58), Expect = 4.6
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 26 RLLPTANSPSGSNQPTNPNRAQHPEGPQSREGATSPVLASLEPPTPTDLPSAR------- 78
RL P P S T + P G A SPV + P +P+D P R
Sbjct: 949 RLSPGEALPPVSQAGTG-KAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSD 1007
Query: 79 -ARPRVPAESG-PGWLHKARRPTRG 101
A PR P + PG H + RG
Sbjct: 1008 GASPRSPVPTTLPGLRHAPWQGPRG 1032
>gi|169168341 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 34.3 bits (77), Expect = 0.029
Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 45 RAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGIL- 103
RA+ P S G P LASL +P+ L R R V A SGP LH P
Sbjct: 7 RAEGARAPASASGEPGP-LASLRGASPS-LELGRPRSEVKAPSGPPGLHSRSSPAPSASV 64
Query: 104 ---------RDVLRHRGVPAQPR---PAPGAHQL 125
RD RG P+ P+ APG L
Sbjct: 65 EPQAWVRDERDAALARGRPSAPKTREQAPGEKPL 98
>gi|113417273 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 34.3 bits (77), Expect = 0.029
Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 45 RAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGIL- 103
RA+ P S G P LASL +P+ L R R V A SGP LH P
Sbjct: 7 RAEGARAPASASGEPGP-LASLRGASPS-LELGRPRSEVKAPSGPPGLHSRSSPAPSASV 64
Query: 104 ---------RDVLRHRGVPAQPR---PAPGAHQL 125
RD RG P+ P+ APG L
Sbjct: 65 EPQAWVRDERDAALARGRPSAPKTREQAPGEKPL 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,620,770
Number of Sequences: 37866
Number of extensions: 479395
Number of successful extensions: 3303
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 507
Number of HSP's that attempted gapping in prelim test: 2560
Number of HSP's gapped (non-prelim): 1174
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.