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Search of human proteins with 28373072
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28373072 sialyltransferase 6 isoform c [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28373072 sialyltransferase 6 isoform c [Homo sapiens] 344 2e-95
gi|28373076 sialyltransferase 6 isoform e [Homo sapiens] 303 6e-83
gi|28373070 sialyltransferase 6 isoform b [Homo sapiens] 299 7e-82
gi|28373068 sialyltransferase 6 isoform a [Homo sapiens] 268 1e-72
gi|28373084 sialyltransferase 6 isoform h [Homo sapiens] 268 2e-72
gi|28373074 sialyltransferase 6 isoform d [Homo sapiens] 258 2e-69
gi|5454060 sialyltransferase 6 isoform j [Homo sapiens] 258 2e-69
gi|28373082 sialyltransferase 6 isoform g [Homo sapiens] 223 8e-59
gi|28373086 sialyltransferase 6 isoform i [Homo sapiens] 194 2e-50
gi|28373078 sialyltransferase 6 isoform f [Homo sapiens] 189 1e-48
gi|161019170 mucin 5AC [Homo sapiens] 30 1.3
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 30 1.3
gi|224282153 angel homolog 1 [Homo sapiens] 28 5.0
gi|27262638 sperm associated antigen 1 [Homo sapiens] 28 5.0
gi|27262636 sperm associated antigen 1 [Homo sapiens] 28 5.0
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 27 6.5
gi|4507043 solute carrier family 6 member 4 [Homo sapiens] 27 8.5
gi|193211610 dipeptidase 3 isoform b [Homo sapiens] 27 8.5
gi|193211608 dipeptidase 3 isoform a [Homo sapiens] 27 8.5
gi|4885581 Rho family GTPase 2 [Homo sapiens] 27 8.5
>gi|28373072 sialyltransferase 6 isoform c [Homo sapiens]
Length = 170
Score = 344 bits (883), Expect = 2e-95
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
Query: 121 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 170
APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 121 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 170
>gi|28373076 sialyltransferase 6 isoform e [Homo sapiens]
Length = 155
Score = 303 bits (775), Expect = 6e-83
Identities = 154/170 (90%), Positives = 155/170 (91%), Gaps = 15/170 (8%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS+ SVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---------------SVVLS 45
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 46 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 105
Query: 121 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 170
APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 106 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 155
>gi|28373070 sialyltransferase 6 isoform b [Homo sapiens]
Length = 390
Score = 299 bits (766), Expect = 7e-82
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
Query: 121 APMFLDDSFRKWARIREFVPPFGIKGQ 147
APMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 121 APMFLDDSFRKWARIREFVPPFGIKGQ 147
>gi|28373068 sialyltransferase 6 isoform a [Homo sapiens]
Length = 444
Score = 268 bits (686), Expect = 1e-72
Identities = 146/201 (72%), Positives = 146/201 (72%), Gaps = 54/201 (26%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKL------------------PAE-------------- 88
FDSAGQTLGSEYDRLGFLLNLDSKL P E
Sbjct: 61 FDSAGQTLGSEYDRLGFLLNLDSKLSPRTLCTVVFGLDCILESPGEPKKLLMPASHPLEI 120
Query: 89 ----------------------LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD 126
LATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD
Sbjct: 121 LKSLSEDAAFALGFLKLPRPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLD 180
Query: 127 DSFRKWARIREFVPPFGIKGQ 147
DSFRKWARIREFVPPFGIKGQ
Sbjct: 181 DSFRKWARIREFVPPFGIKGQ 201
>gi|28373084 sialyltransferase 6 isoform h [Homo sapiens]
Length = 139
Score = 268 bits (684), Expect = 2e-72
Identities = 138/170 (81%), Positives = 139/170 (81%), Gaps = 31/170 (18%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED---------------------- 38
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
S+YDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 39 ---------SKYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 89
Query: 121 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 170
APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH
Sbjct: 90 APMFLDDSFRKWARIREFVPPFGIKGQVLDAQYPARERVSAEAGESSRHH 139
>gi|28373074 sialyltransferase 6 isoform d [Homo sapiens]
Length = 277
Score = 258 bits (658), Expect = 2e-69
Identities = 131/147 (89%), Positives = 132/147 (89%), Gaps = 15/147 (10%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS+ SVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---------------SVVLS 45
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 46 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 105
Query: 121 APMFLDDSFRKWARIREFVPPFGIKGQ 147
APMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 106 APMFLDDSFRKWARIREFVPPFGIKGQ 132
>gi|5454060 sialyltransferase 6 isoform j [Homo sapiens]
Length = 375
Score = 258 bits (658), Expect = 2e-69
Identities = 131/147 (89%), Positives = 132/147 (89%), Gaps = 15/147 (10%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS+ SVVLS
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSN---------------SVVLS 45
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 46 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 105
Query: 121 APMFLDDSFRKWARIREFVPPFGIKGQ 147
APMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 106 APMFLDDSFRKWARIREFVPPFGIKGQ 132
>gi|28373082 sialyltransferase 6 isoform g [Homo sapiens]
Length = 359
Score = 223 bits (567), Expect = 8e-59
Identities = 115/147 (78%), Positives = 116/147 (78%), Gaps = 31/147 (21%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLS 60
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEED---------------------- 38
Query: 61 FDSAGQTLGSEYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 120
S+YDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP
Sbjct: 39 ---------SKYDRLGFLLNLDSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKP 89
Query: 121 APMFLDDSFRKWARIREFVPPFGIKGQ 147
APMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 90 APMFLDDSFRKWARIREFVPPFGIKGQ 116
>gi|28373086 sialyltransferase 6 isoform i [Homo sapiens]
Length = 413
Score = 194 bits (494), Expect = 2e-50
Identities = 114/171 (66%), Positives = 118/171 (69%), Gaps = 25/171 (14%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYS------HSSSPQEKPVA 54
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS KY + S
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS-KYDRLGFLLNLDSKLSPRTL 59
Query: 55 DSVVLSFD----SAGQT-------------LGSEYDRLGFLLN-LDSKLPAELATKYANF 96
+VV D S G+ L S + F L L PAELATKYANF
Sbjct: 60 CTVVFGLDCILESPGEPKKLLMPASHPLEILKSLSEDAAFALGFLKLPRPAELATKYANF 119
Query: 97 SEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 147
SEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ
Sbjct: 120 SEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQ 170
>gi|28373078 sialyltransferase 6 isoform f [Homo sapiens]
Length = 429
Score = 189 bits (480), Expect = 1e-48
Identities = 112/186 (60%), Positives = 118/186 (63%), Gaps = 39/186 (20%)
Query: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVAD----- 55
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDS+ S + +
Sbjct: 1 MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEEDSNSVVLSFDSAGQTLGSEYDRL 60
Query: 56 ----------------SVVLSFD----SAGQT-------------LGSEYDRLGFLLN-L 81
+VV D S G+ L S + F L L
Sbjct: 61 GFLLNLDSKLSPRTLCTVVFGLDCILESPGEPKKLLMPASHPLEILKSLSEDAAFALGFL 120
Query: 82 DSKLPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP 141
PAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP
Sbjct: 121 KLPRPAELATKYANFSEGACKPGYASALMTAIFPRFSKPAPMFLDDSFRKWARIREFVPP 180
Query: 142 FGIKGQ 147
FGIKGQ
Sbjct: 181 FGIKGQ 186
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.6 bits (65), Expect = 1.3
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 57 VVLSFDSAGQTL--GSEYD----RLGFLL--NLDSKLPAELATKYANFSEGACKPGYASA 108
V+L F +G + S Y RLG +L N D L EL TKYAN + G C
Sbjct: 159 VLLPFSQSGVLIQQSSSYTKVEARLGLVLMWNHDDSLLLELDTKYANKTCGLCGDFNGMP 218
Query: 109 LMTAIFPRFSKPAPM 123
+++ + +K PM
Sbjct: 219 VVSELLSHNTKLTPM 233
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 29.6 bits (65), Expect = 1.3
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 57 VVLSFDSAGQTL--GSEYD----RLGFLL--NLDSKLPAELATKYANFSEGACKPGYASA 108
V+L F +G + S Y RLG +L N D L EL TKYAN + G C
Sbjct: 159 VLLPFSQSGVLIQQSSSYTKVEARLGLVLMWNHDDSLLLELDTKYANKTCGLCGDFNGMP 218
Query: 109 LMTAIFPRFSKPAPM 123
+++ + +K PM
Sbjct: 219 VVSELLSHNTKLTPM 233
>gi|224282153 angel homolog 1 [Homo sapiens]
Length = 670
Score = 27.7 bits (60), Expect = 5.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 34 QWEEDSSKYSHSSSPQEKPVADSVVLSFDSAGQ 66
QWEED + + S +P+ P ++ + F+ GQ
Sbjct: 173 QWEEDPAVLAWSIAPEPVPQEEASIWPFEGLGQ 205
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.7 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 149 LDAQYPARERVSAEAGESSRH 169
L A +PA+E +S +AG+SS H
Sbjct: 592 LQAWHPAKEMISKQAGDSSSH 612
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.7 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 149 LDAQYPARERVSAEAGESSRH 169
L A +PA+E +S +AG+SS H
Sbjct: 592 LQAWHPAKEMISKQAGDSSSH 612
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 27.3 bits (59), Expect = 6.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 98 EGACKPGYASALMTAIFPRFSKPAPMFLDD 127
EG PG AS TA+FPR ++P F D
Sbjct: 157 EGLGPPGPASLGTTALFPRKAQPPQAFRGD 186
>gi|4507043 solute carrier family 6 member 4 [Homo sapiens]
Length = 630
Score = 26.9 bits (58), Expect = 8.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 12 LALCLFLVLGFLYYSAWK 29
LALC+ L+ +Y+S WK
Sbjct: 255 LALCIMLIFTVIYFSIWK 272
>gi|193211610 dipeptidase 3 isoform b [Homo sapiens]
Length = 512
Score = 26.9 bits (58), Expect = 8.5
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 11 LLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLSFDSAGQTLGS 70
L L F VLG Y + W E S+K+ H V S G+ +
Sbjct: 230 LSVLRSFYVLGVRYLTLTFTCSTPWAESSTKFRHHMYTN--------VSGLTSFGEKVVE 281
Query: 71 EYDRLGFLLNL 81
E +RLG +++L
Sbjct: 282 ELNRLGMMIDL 292
>gi|193211608 dipeptidase 3 isoform a [Homo sapiens]
Length = 513
Score = 26.9 bits (58), Expect = 8.5
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 11 LLALCLFLVLGFLYYSAWKLHLLQWEEDSSKYSHSSSPQEKPVADSVVLSFDSAGQTLGS 70
L L F VLG Y + W E S+K+ H V S G+ +
Sbjct: 230 LSVLRSFYVLGVRYLTLTFTCSTPWAESSTKFRHHMYTN--------VSGLTSFGEKVVE 281
Query: 71 EYDRLGFLLNL 81
E +RLG +++L
Sbjct: 282 ELNRLGMMIDL 292
>gi|4885581 Rho family GTPase 2 [Homo sapiens]
Length = 227
Score = 26.9 bits (58), Expect = 8.5
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 29 KLHLLQWEEDSSKYSHSSSPQEKPVADSVVLSFD-SAGQTLGS 70
++ L W+ S Y + P P +D+V++ FD S +TL S
Sbjct: 54 RIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDS 96
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,571,313
Number of Sequences: 37866
Number of extensions: 274435
Number of successful extensions: 650
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 621
Number of HSP's gapped (non-prelim): 28
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.