Search of human proteins with 28372527

Search of human proteins with 28372527

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28372527 lysozyme g-like protein 1 precursor [Homo sapiens]
         (194 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28372527 lysozyme g-like protein 1 precursor [Homo sapiens]        402   e-112
gi|31652255 lysozyme G-like 2 [Homo sapiens]                          144   6e-35
gi|41872631 fatty acid synthase [Homo sapiens]                         29   2.2  
gi|4506857 chemokine (C-X3-C motif) ligand 1 [Homo sapiens]            28   3.7  
gi|239752657 PREDICTED: hypothetical protein [Homo sapiens]            28   3.7  
gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo ...    28   3.7  
gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo ...    28   3.7  
gi|38348376 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltran...    28   3.7  
gi|217035154 RCSD domain containing 1 [Homo sapiens]                   28   6.4  
gi|31742505 Rho family guanine-nucleotide exchange factor [Homo ...    28   6.4  
gi|33286444 mastermind-like 2 [Homo sapiens]                           27   8.4  
gi|41349497 pyruvate dehydrogenase phosphatase isoenzyme 2 [Homo...    27   8.4  

>gi|28372527 lysozyme g-like protein 1 precursor [Homo sapiens]
          Length = 194

 Score =  402 bits (1032), Expect = e-112
 Identities = 194/194 (100%), Positives = 194/194 (100%)

Query: 1   MSALWLLLGLLALMDLSESSNWGCYGNIQSLDTPGASCGIGRRHGLNYCGVRASERLAEI 60
           MSALWLLLGLLALMDLSESSNWGCYGNIQSLDTPGASCGIGRRHGLNYCGVRASERLAEI
Sbjct: 1   MSALWLLLGLLALMDLSESSNWGCYGNIQSLDTPGASCGIGRRHGLNYCGVRASERLAEI 60

Query: 61  DMPYLLKYQPMMQTIGQKYCMDPAVIAGVLSRKSPGDKILVNMGDRTSMVQDPGSQAPTS 120
           DMPYLLKYQPMMQTIGQKYCMDPAVIAGVLSRKSPGDKILVNMGDRTSMVQDPGSQAPTS
Sbjct: 61  DMPYLLKYQPMMQTIGQKYCMDPAVIAGVLSRKSPGDKILVNMGDRTSMVQDPGSQAPTS 120

Query: 121 WISESQVSQTTEVLTTRIKEIQRRFPTWTPDQYLRGGLCAYSGGAGYVRSSQDLSCDFCN 180
           WISESQVSQTTEVLTTRIKEIQRRFPTWTPDQYLRGGLCAYSGGAGYVRSSQDLSCDFCN
Sbjct: 121 WISESQVSQTTEVLTTRIKEIQRRFPTWTPDQYLRGGLCAYSGGAGYVRSSQDLSCDFCN 180

Query: 181 DVLARAKYLKRHGF 194
           DVLARAKYLKRHGF
Sbjct: 181 DVLARAKYLKRHGF 194


>gi|31652255 lysozyme G-like 2 [Homo sapiens]
          Length = 212

 Score =  144 bits (362), Expect = 6e-35
 Identities = 72/178 (40%), Positives = 111/178 (62%), Gaps = 9/178 (5%)

Query: 23  GCYGNIQSLDTPGASCGIGRRHGLNYCGVRASERLAEIDMPYLLKYQPMMQTIGQKYCMD 82
           GCYG+I ++ T GA+C     + +  CG+R SE  AE+D+  +  YQ +++ +GQ++C+D
Sbjct: 38  GCYGDIMTMKTSGATCDA---NSVMNCGIRGSEMFAEMDLRAIKPYQTLIKEVGQRHCVD 94

Query: 83  PAVIAGVLSRKSPGDKILVNMGDRTS-----MVQDPGSQAPT-SWISESQVSQTTEVLTT 136
           PAVIA ++SR+S G  +L +  D        M  D  +  P  +W S+  +SQ T +LT 
Sbjct: 95  PAVIAAIISRESHGGSVLQDGWDHRGLKFGLMQLDKQTYHPVGAWDSKEHLSQATGILTE 154

Query: 137 RIKEIQRRFPTWTPDQYLRGGLCAYSGGAGYVRSSQDLSCDFCNDVLARAKYLKRHGF 194
           RIK IQ++FPTW+  Q+L+GGL A+  G   + +  D+  DF ND++ARAK+ KR  F
Sbjct: 155 RIKAIQKKFPTWSVAQHLKGGLSAFKSGIEAIATPSDIDNDFVNDIIARAKFYKRQSF 212


>gi|41872631 fatty acid synthase [Homo sapiens]
          Length = 2511

 Score = 29.3 bits (64), Expect = 2.2
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 74  TIGQKYCMDPAVIAGVLSRKSPGDKI---LVNMGDRTSMVQDPGSQAPTSWISESQV 127
           T G  YC    V+A +L++KS   ++   ++N G  T   ++ G   P+  I E  +
Sbjct: 217 TAGNGYCRSEGVVAVLLTKKSLARRVYATILNAGTNTDGFKEQGVTFPSGDIQEQLI 273


>gi|4506857 chemokine (C-X3-C motif) ligand 1 [Homo sapiens]
          Length = 397

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 11/54 (20%)

Query: 41 GRRHGLNYCGVRASERLAEIDMPYLLKYQPMMQTIGQK-----------YCMDP 83
          G+ HG+  C +  S+  ++I +  L+ YQ    + G++           +C DP
Sbjct: 24 GQHHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRAIILETRQHRLFCADP 77


>gi|239752657 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 168

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 84  AVIAGVLSRKSPGDKILVNMGDR 106
           A +AG ++R++PG ++ V  GDR
Sbjct: 113 AAVAGAVARRAPGGRLRVGFGDR 135


>gi|239747205 PREDICTED: hypothetical protein XP_002346408 [Homo
           sapiens]
          Length = 152

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 84  AVIAGVLSRKSPGDKILVNMGDR 106
           A +AG ++R++PG ++ V  GDR
Sbjct: 97  AAVAGAVARRAPGGRLRVGFGDR 119


>gi|239741001 PREDICTED: hypothetical protein XP_002342060 [Homo
           sapiens]
          Length = 168

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 84  AVIAGVLSRKSPGDKILVNMGDR 106
           A +AG ++R++PG ++ V  GDR
Sbjct: 113 AAVAGAVARRAPGGRLRVGFGDR 135


>gi|38348376 UDP-GlcNAc:betaGal
           beta-1,3-N-acetylglucosaminyltransferase 8 [Homo
           sapiens]
          Length = 397

 Score = 28.5 bits (62), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 146 PTWTPDQYLRGGLCAYSGGAGYV 168
           P + P+ +  GG  AY+ G GYV
Sbjct: 289 PFYVPESFFEGGYPAYASGGGYV 311


>gi|217035154 RCSD domain containing 1 [Homo sapiens]
          Length = 416

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 64  YLLKYQPMMQTIGQKYCMDPAVIAGVLSRKSPGDKILVN-MGDRTSMVQDPGSQAPTSWI 122
           + +K  P+++ +      DPA +    S KSPG K +V+      S    PG ++  S  
Sbjct: 78  FKVKSSPLIEKLQANLTFDPAALLPGASPKSPGLKAMVSPFHSPPSTPSSPGVRSRPSEA 137

Query: 123 SESQVS 128
            E  VS
Sbjct: 138 EEVPVS 143


>gi|31742505 Rho family guanine-nucleotide exchange factor [Homo
           sapiens]
          Length = 1114

 Score = 27.7 bits (60), Expect = 6.4
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 108 SMVQDPGSQAPTSWISESQVSQTT--EVLTTRIKEIQRRFPTWTPDQYLRGGLCAYSGGA 165
           S +Q+P ++ P S ++ +Q+   T  E L  ++ E ++ F  +  + +L+   C      
Sbjct: 266 SCIQEPATKCPNSKLNLNQLENVTTMERLLVQLDETEKAFSHFWSEHHLKLNQCL----- 320

Query: 166 GYVRSSQDLSCDFCNDVLA 184
                 Q    DFC   LA
Sbjct: 321 ----QLQHFEHDFCKAKLA 335


>gi|33286444 mastermind-like 2 [Homo sapiens]
          Length = 1156

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 106 RTSMVQDPGSQAPTSWISESQVSQTTEVLTTRIKEIQRRFPTWTPDQY 153
           RTS V    +    +W S+   S+  E LT+       RFPT TP  Y
Sbjct: 951 RTSNVMITSNTTAPNWASQEGTSKQQEALTS----AGVRFPTGTPAAY 994


>gi|41349497 pyruvate dehydrogenase phosphatase isoenzyme 2 [Homo
           sapiens]
          Length = 529

 Score = 27.3 bits (59), Expect = 8.4
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 26  GNIQSLDTPGASCGIGRRHGLNYCGVRASERLAEIDMPYLLKYQPMMQTIGQKYCMDPAV 85
           G    L T G   GI   HG + C    SERL       L+ +Q +    G    M P +
Sbjct: 125 GVASCLQTNGLMFGIFDGHGGHACAQAVSERLFYYVAVSLMSHQTLEHMEGAMESMKP-L 183

Query: 86  IAGVLSRKSPGDKI 99
           +  +   K PGD I
Sbjct: 184 LPILHWLKHPGDSI 197


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,591,312
Number of Sequences: 37866
Number of extensions: 300309
Number of successful extensions: 944
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 12
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.