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Search of human proteins with 26787984
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26787984 interleukin 15 preproprotein [Homo sapiens]
(162 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26787984 interleukin 15 preproprotein [Homo sapiens] 325 1e-89
gi|10835153 interleukin 15 preproprotein [Homo sapiens] 325 1e-89
gi|11141875 interleukin 21 [Homo sapiens] 38 0.003
gi|93588611 angiotensin II receptor-associated protein isoform e... 30 1.2
gi|93588503 angiotensin II receptor-associated protein isoform d... 30 1.2
gi|27894376 cell adhesion molecule with homology to L1CAM precur... 28 3.5
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 28 4.5
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 28 4.5
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 28 4.5
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 27 5.9
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 27 5.9
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 27 5.9
gi|52353276 olfactory receptor, family 6, subfamily N, member 1 ... 27 5.9
>gi|26787984 interleukin 15 preproprotein [Homo sapiens]
Length = 162
Score = 325 bits (833), Expect = 1e-89
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60
MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI
Sbjct: 1 MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60
Query: 61 EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120
EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN
Sbjct: 61 EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120
Query: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162
SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
Sbjct: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162
>gi|10835153 interleukin 15 preproprotein [Homo sapiens]
Length = 162
Score = 325 bits (833), Expect = 1e-89
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60
MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI
Sbjct: 1 MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60
Query: 61 EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120
EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN
Sbjct: 61 EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120
Query: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162
SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
Sbjct: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162
>gi|11141875 interleukin 21 [Homo sapiens]
Length = 162
Score = 38.1 bits (87), Expect = 0.003
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Query: 51 VNVISDLKK-IEDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHD 109
++++ LK + DL+ L DV +C+ +A CF Q L+S + ++
Sbjct: 43 IDIVDQLKNYVNDLVPEF-----LPAPEDVETNCEWSAFSCF----QKAQLKSANTGNNE 93
Query: 110 TVENLII--LANNSLSSNGNVTESG---CKECEELEEKNIKEFLQSFVHIVQMFIN 160
+ N+ I L S+N + C C+ E+K KEFL+ F ++Q I+
Sbjct: 94 RIINVSIKKLKRKPPSTNAGRRQKHRLTCPSCDSYEKKPPKEFLERFKSLLQKMIH 149
>gi|93588611 angiotensin II receptor-associated protein isoform e
[Homo sapiens]
Length = 147
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 15/55 (27%)
Query: 4 SKPHLRSISIQCYLCLLLNSHFLTEAGIHVFI---------------LGCFSAGL 43
+KP L +I + C LC L ++ AG+H + +GC SAGL
Sbjct: 28 AKPRLETIELTCALCKLRSAAHRATAGLHCILRLLCLGQLHHPGLGRVGCGSAGL 82
>gi|93588503 angiotensin II receptor-associated protein isoform d
[Homo sapiens]
Length = 155
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 15/55 (27%)
Query: 4 SKPHLRSISIQCYLCLLLNSHFLTEAGIHVFI---------------LGCFSAGL 43
+KP L +I + C LC L ++ AG+H + +GC SAGL
Sbjct: 28 AKPRLETIELTCALCKLRSAAHRATAGLHCILRLLCLGQLHHPGLGRVGCGSAGL 82
>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
[Homo sapiens]
Length = 1224
Score = 28.1 bits (61), Expect = 3.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 33 VFILGCFSAGLPKTEANWVNVISDLKK 59
+ +L CF+ GLP + +W + DL K
Sbjct: 273 ILLLECFAEGLPTPQVDWNKIGGDLPK 299
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 27.7 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 138 ELEEKNIKEFLQSFVHIVQMFINT 161
+++E +KEF SF ++V++ INT
Sbjct: 341 DIDENELKEFFMSFGNVVELRINT 364
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 27.7 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 138 ELEEKNIKEFLQSFVHIVQMFINT 161
+++E +KEF SF ++V++ INT
Sbjct: 341 DIDENELKEFFMSFGNVVELRINT 364
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 27.7 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 138 ELEEKNIKEFLQSFVHIVQMFINT 161
+++E +KEF SF ++V++ INT
Sbjct: 308 DIDENELKEFFMSFGNVVELRINT 331
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 27.3 bits (59), Expect = 5.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 36 LGCFSAGLPKTEANWVNVISDLKKIEDLIQSMHIDATLYTESDVHPS 82
L C SAG P++ A W + S K+E + + S PS
Sbjct: 3132 LECVSAGEPRSSARWTRISSTPAKLEQRTYGLMDSHAVLQISSAKPS 3178
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 27.3 bits (59), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 109 DTVENLIILANNSLSSNGNVTESGCKECE 137
D V+++++ A+ L+S+ V ESGC + E
Sbjct: 11 DEVDSVLLSASKILNSSEGVKESGCSDTE 39
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 27.3 bits (59), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 109 DTVENLIILANNSLSSNGNVTESGCKECE 137
D V+++++ A+ L+S+ V ESGC + E
Sbjct: 11 DEVDSVLLSASKILNSSEGVKESGCSDTE 39
>gi|52353276 olfactory receptor, family 6, subfamily N, member 1
[Homo sapiens]
Length = 312
Score = 27.3 bits (59), Expect = 5.9
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 6 PHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVIS 55
PHL+ + I +L LLL + +F++ C + L ++V+++S
Sbjct: 18 PHLQGVQIYLFLLLLLIYLMTVLGNLLIFLVVCLDSRLHTPMYHFVSILS 67
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,564,364
Number of Sequences: 37866
Number of extensions: 209342
Number of successful extensions: 636
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 13
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.