Guide to the Human Genome
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Search of human proteins with 26787984

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|26787984 interleukin 15 preproprotein [Homo sapiens]
         (162 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|26787984 interleukin 15 preproprotein [Homo sapiens]               325   1e-89
gi|10835153 interleukin 15 preproprotein [Homo sapiens]               325   1e-89
gi|11141875 interleukin 21 [Homo sapiens]                              38   0.003
gi|93588611 angiotensin II receptor-associated protein isoform e...    30   1.2  
gi|93588503 angiotensin II receptor-associated protein isoform d...    30   1.2  
gi|27894376 cell adhesion molecule with homology to L1CAM precur...    28   3.5  
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro...    28   4.5  
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro...    28   4.5  
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro...    28   4.5  
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]             27   5.9  
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s...    27   5.9  
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa...    27   5.9  
gi|52353276 olfactory receptor, family 6, subfamily N, member 1 ...    27   5.9  

>gi|26787984 interleukin 15 preproprotein [Homo sapiens]
          Length = 162

 Score =  325 bits (833), Expect = 1e-89
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60
           MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI
Sbjct: 1   MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60

Query: 61  EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120
           EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN
Sbjct: 61  EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120

Query: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162
           SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
Sbjct: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162


>gi|10835153 interleukin 15 preproprotein [Homo sapiens]
          Length = 162

 Score =  325 bits (833), Expect = 1e-89
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60
           MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI
Sbjct: 1   MRISKPHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVISDLKKI 60

Query: 61  EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120
           EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN
Sbjct: 61  EDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANN 120

Query: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162
           SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS
Sbjct: 121 SLSSNGNVTESGCKECEELEEKNIKEFLQSFVHIVQMFINTS 162


>gi|11141875 interleukin 21 [Homo sapiens]
          Length = 162

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)

Query: 51  VNVISDLKK-IEDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHD 109
           ++++  LK  + DL+        L    DV  +C+ +A  CF    Q   L+S +   ++
Sbjct: 43  IDIVDQLKNYVNDLVPEF-----LPAPEDVETNCEWSAFSCF----QKAQLKSANTGNNE 93

Query: 110 TVENLII--LANNSLSSNGNVTESG---CKECEELEEKNIKEFLQSFVHIVQMFIN 160
            + N+ I  L     S+N    +     C  C+  E+K  KEFL+ F  ++Q  I+
Sbjct: 94  RIINVSIKKLKRKPPSTNAGRRQKHRLTCPSCDSYEKKPPKEFLERFKSLLQKMIH 149


>gi|93588611 angiotensin II receptor-associated protein isoform e
          [Homo sapiens]
          Length = 147

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 15/55 (27%)

Query: 4  SKPHLRSISIQCYLCLLLNSHFLTEAGIHVFI---------------LGCFSAGL 43
          +KP L +I + C LC L ++     AG+H  +               +GC SAGL
Sbjct: 28 AKPRLETIELTCALCKLRSAAHRATAGLHCILRLLCLGQLHHPGLGRVGCGSAGL 82


>gi|93588503 angiotensin II receptor-associated protein isoform d
          [Homo sapiens]
          Length = 155

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 15/55 (27%)

Query: 4  SKPHLRSISIQCYLCLLLNSHFLTEAGIHVFI---------------LGCFSAGL 43
          +KP L +I + C LC L ++     AG+H  +               +GC SAGL
Sbjct: 28 AKPRLETIELTCALCKLRSAAHRATAGLHCILRLLCLGQLHHPGLGRVGCGSAGL 82


>gi|27894376 cell adhesion molecule with homology to L1CAM precursor
           [Homo sapiens]
          Length = 1224

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 33  VFILGCFSAGLPKTEANWVNVISDLKK 59
           + +L CF+ GLP  + +W  +  DL K
Sbjct: 273 ILLLECFAEGLPTPQVDWNKIGGDLPK 299


>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform a [Homo sapiens]
          Length = 482

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 138 ELEEKNIKEFLQSFVHIVQMFINT 161
           +++E  +KEF  SF ++V++ INT
Sbjct: 341 DIDENELKEFFMSFGNVVELRINT 364


>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform a [Homo sapiens]
          Length = 482

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 138 ELEEKNIKEFLQSFVHIVQMFINT 161
           +++E  +KEF  SF ++V++ INT
Sbjct: 341 DIDENELKEFFMSFGNVVELRINT 364


>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform b [Homo sapiens]
          Length = 449

 Score = 27.7 bits (60), Expect = 4.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 138 ELEEKNIKEFLQSFVHIVQMFINT 161
           +++E  +KEF  SF ++V++ INT
Sbjct: 308 DIDENELKEFFMSFGNVVELRINT 331


>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
          Length = 4391

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 36   LGCFSAGLPKTEANWVNVISDLKKIEDLIQSMHIDATLYTESDVHPS 82
            L C SAG P++ A W  + S   K+E     +     +   S   PS
Sbjct: 3132 LECVSAGEPRSSARWTRISSTPAKLEQRTYGLMDSHAVLQISSAKPS 3178


>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
           sapiens]
          Length = 796

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 109 DTVENLIILANNSLSSNGNVTESGCKECE 137
           D V+++++ A+  L+S+  V ESGC + E
Sbjct: 11  DEVDSVLLSASKILNSSEGVKESGCSDTE 39


>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
           sapiens]
          Length = 833

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)

Query: 109 DTVENLIILANNSLSSNGNVTESGCKECE 137
           D V+++++ A+  L+S+  V ESGC + E
Sbjct: 11  DEVDSVLLSASKILNSSEGVKESGCSDTE 39


>gi|52353276 olfactory receptor, family 6, subfamily N, member 1
          [Homo sapiens]
          Length = 312

 Score = 27.3 bits (59), Expect = 5.9
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 6  PHLRSISIQCYLCLLLNSHFLTEAGIHVFILGCFSAGLPKTEANWVNVIS 55
          PHL+ + I  +L LLL         + +F++ C  + L     ++V+++S
Sbjct: 18 PHLQGVQIYLFLLLLLIYLMTVLGNLLIFLVVCLDSRLHTPMYHFVSILS 67


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,564,364
Number of Sequences: 37866
Number of extensions: 209342
Number of successful extensions: 636
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 13
length of query: 162
length of database: 18,247,518
effective HSP length: 94
effective length of query: 68
effective length of database: 14,688,114
effective search space: 998791752
effective search space used: 998791752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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