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Search of human proteins with 25306272
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|25306272 mitochondrial ribosomal protein L11 isoform b [Homo
sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|25306272 mitochondrial ribosomal protein L11 isoform b [Homo ... 316 7e-87
gi|7705618 mitochondrial ribosomal protein L11 isoform a [Homo s... 301 1e-82
gi|25306275 mitochondrial ribosomal protein L11 isoform c [Homo ... 240 4e-64
gi|9558729 golgi associated, gamma adaptin ear containing, ARF b... 31 0.56
gi|48527952 golgi associated, gamma adaptin ear containing, ARF ... 31 0.56
gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens] 30 0.73
gi|4827012 solute carrier family 1 (high affinity aspartate/glut... 30 0.95
gi|48527954 golgi associated, gamma adaptin ear containing, ARF ... 30 0.95
gi|32698688 citron [Homo sapiens] 30 1.2
gi|22035616 oxysterol-binding protein-like protein 7 [Homo sapiens] 28 3.6
gi|4758018 calponin 2 isoform a [Homo sapiens] 28 4.7
gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1... 27 6.1
gi|222136644 RAD21-like 1 [Homo sapiens] 27 8.0
gi|239757861 PREDICTED: similar to armadillo repeat containing, ... 27 8.0
>gi|25306272 mitochondrial ribosomal protein L11 isoform b [Homo
sapiens]
Length = 166
Score = 316 bits (809), Expect = 7e-87
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MSKLGRAARGLRKPERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPT 60
MSKLGRAARGLRKPERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPT
Sbjct: 1 MSKLGRAARGLRKPERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPT 60
Query: 61 VSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIG 120
VSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIG
Sbjct: 61 VSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIG 120
Query: 121 SARSLGIRVVKDLSSEELAAFQKERAIFLAAQKEADLAAQEEAAKK 166
SARSLGIRVVKDLSSEELAAFQKERAIFLAAQKEADLAAQEEAAKK
Sbjct: 121 SARSLGIRVVKDLSSEELAAFQKERAIFLAAQKEADLAAQEEAAKK 166
>gi|7705618 mitochondrial ribosomal protein L11 isoform a [Homo
sapiens]
Length = 192
Score = 301 bits (772), Expect = 1e-82
Identities = 166/192 (86%), Positives = 166/192 (86%), Gaps = 26/192 (13%)
Query: 1 MSKLGRAARGLRKPE--------------------------RGVSINQFCKEFNERTKDI 34
MSKLGRAARGLRKPE RGVSINQFCKEFNERTKDI
Sbjct: 1 MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60
Query: 35 KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 94
KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI
Sbjct: 61 KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 120
Query: 95 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSEELAAFQKERAIFLAAQKE 154
ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSEELAAFQKERAIFLAAQKE
Sbjct: 121 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSEELAAFQKERAIFLAAQKE 180
Query: 155 ADLAAQEEAAKK 166
ADLAAQEEAAKK
Sbjct: 181 ADLAAQEEAAKK 192
>gi|25306275 mitochondrial ribosomal protein L11 isoform c [Homo
sapiens]
Length = 181
Score = 240 bits (613), Expect = 4e-64
Identities = 132/161 (81%), Positives = 133/161 (82%), Gaps = 26/161 (16%)
Query: 1 MSKLGRAARGLRKPE--------------------------RGVSINQFCKEFNERTKDI 34
MSKLGRAARGLRKPE RGVSINQFCKEFNERTKDI
Sbjct: 1 MSKLGRAARGLRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDI 60
Query: 35 KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 94
KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI
Sbjct: 61 KEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEI 120
Query: 95 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSS 135
ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK+ S
Sbjct: 121 ARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKERCS 161
>gi|9558729 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 1 [Homo sapiens]
Length = 639
Score = 30.8 bits (68), Expect = 0.56
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 2 SKLGRAARGLRKPERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTV 61
+++ RA L K SIN FC++ NE EG PL T++L KI P
Sbjct: 12 ARINRATNPLNKELDWASINGFCEQLNEDF----EGPPLATRLLAH-------KIQSPQE 60
Query: 62 SYFLKAAAGIEKGARQTGK 80
++A +E + GK
Sbjct: 61 WEAIQALTVLETCMKSCGK 79
>gi|48527952 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 2 [Homo sapiens]
Length = 552
Score = 30.8 bits (68), Expect = 0.56
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 2 SKLGRAARGLRKPERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTV 61
+++ RA L K SIN FC++ NE EG PL T++L KI P
Sbjct: 12 ARINRATNPLNKELDWASINGFCEQLNEDF----EGPPLATRLLAH-------KIQSPQE 60
Query: 62 SYFLKAAAGIEKGARQTGK 80
++A +E + GK
Sbjct: 61 WEAIQALTVLETCMKSCGK 79
>gi|169790964 hypothetical protein LOC51252 isoform A [Homo sapiens]
Length = 647
Score = 30.4 bits (67), Expect = 0.73
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 65 LKAAAGIEKGARQTG-KEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSAR 123
L AG+ + Q +E+A ++L H+Y+ + AQ + A D L ++ + ++
Sbjct: 368 LPGEAGLNENEEQDAPQEIALDISLGHIYKFLALCAQAQPGAYTDENLMGLIELLCRTSL 427
Query: 124 SLGIRVVKDLSSEEL 138
+G+R++ + ++L
Sbjct: 428 DVGLRLLPKVDLQQL 442
>gi|4827012 solute carrier family 1 (high affinity
aspartate/glutamate transporter), member 6 [Homo
sapiens]
Length = 564
Score = 30.0 bits (66), Expect = 0.95
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 44 ILVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEA 103
I + +E+ +GQ T AA + GA G AGLVT+ V + +D
Sbjct: 436 IFIAQVNNYELNLGQITTISITATAASV--GA--AGIPQAGLVTMVIVLTSVGLPTEDIT 491
Query: 104 FALQD---VPLSSVVRSIIGSARSLGIRVVKDLSSEELAAFQKERAIFLAAQKEADLAAQ 160
+ + + +++G S+G V++ LS EL + E + + L AQ
Sbjct: 492 LIIAVDWFLDRLRTMTNVLGD--SIGAAVIEHLSQRELELQEAELTLPSLGKPYKSLMAQ 549
Query: 161 EEAAKK 166
E+ A +
Sbjct: 550 EKGASR 555
>gi|48527954 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 3 [Homo sapiens]
Length = 89
Score = 30.0 bits (66), Expect = 0.95
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 2 SKLGRAARGLRKPERGVSINQFCKEFNERTKDIKEGIPLPTKIL 45
+++ RA L K SIN FC++ NE EG PL T++L
Sbjct: 12 ARINRATNPLNKELDWASINGFCEQLNEDF----EGPPLATRLL 51
>gi|32698688 citron [Homo sapiens]
Length = 2027
Score = 29.6 bits (65), Expect = 1.2
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 85 LVTLKHVYEIARIKAQDEAFALQDVPLSSV---VRSIIGSARSLGIRVVKDLSSEELAAF 141
L+ +KHV R K D LQ++ S+ VRS++G ++VV++ ++ ++ A
Sbjct: 67 LMKIKHVSNFVR-KYSDTIAELQELQPSAKDFEVRSLVGCGHFAEVQVVREKATGDIYAM 125
Query: 142 QKERAIFLAAQKEADLAAQE 161
+ + L AQ++ +E
Sbjct: 126 KVMKKKALLAQEQVSFFEEE 145
>gi|22035616 oxysterol-binding protein-like protein 7 [Homo sapiens]
Length = 842
Score = 28.1 bits (61), Expect = 3.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 15 ERGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTF 52
ER QF E NE T ++K +P T ++PD+ +
Sbjct: 731 ERNFGFTQFALELNELTAELKRSLP-STDTRLRPDQRY 767
>gi|4758018 calponin 2 isoform a [Homo sapiens]
Length = 309
Score = 27.7 bits (60), Expect = 4.7
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 30 RTKDIKEGIPLPTKILVKPDRTFE---IKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLV 86
+TK ++ G+ + K K +R F+ +K GQ + + G K A Q+G G
Sbjct: 132 KTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIGLQM----GTNKCASQSGMTAYG-- 185
Query: 87 TLKHVYE 93
T +H+Y+
Sbjct: 186 TRRHLYD 192
>gi|4758104 cytochrome P450, family 7, subfamily B, polypeptide 1
[Homo sapiens]
Length = 506
Score = 27.3 bits (59), Expect = 6.1
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 111 LSSVVRSIIGSARSLGIRVVKDLSSEELAAFQKERAIFLAAQ 152
+S++ ++G+ +S+ +++K SSE+LA Q +F + Q
Sbjct: 227 VSNIPIELLGNVKSIREKIIKCFSSEKLAKMQGWSEVFQSRQ 268
>gi|222136644 RAD21-like 1 [Homo sapiens]
Length = 556
Score = 26.9 bits (58), Expect = 8.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 93 EIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVKDLSSE 136
E + ++E F L + +S + G R L I +K+LSS+
Sbjct: 266 ETILLSTEEEGFTLDPIDISDIAEKRKGKKRRLLIDPIKELSSK 309
>gi|239757861 PREDICTED: similar to armadillo repeat containing,
X-linked 4 [Homo sapiens]
Length = 2382
Score = 26.9 bits (58), Expect = 8.0
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 66 KAAAGIEKGARQTGKEVAG------LVTLKHVYEIARIKAQDEAFALQDVPLSSVV-RSI 118
KA G E + K VAG VTL V AR A EA D +V +
Sbjct: 196 KAMVGAEPETQSESKVVAGTLVMTEAVTLTEVKAKAREVAMKEAVTQTDAEAGKIVKKEA 255
Query: 119 IGSARSLGIRVVKDLSSEELAAFQKERAIFLAAQKEADL 157
+ ++ +V ++ A Q + + A+KE ++
Sbjct: 256 VTQTKAKAWALVAKTEAKREAMTQTKAETHILAEKETEI 294
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,044,992
Number of Sequences: 37866
Number of extensions: 194800
Number of successful extensions: 455
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 14
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.