Search of human proteins with 239757879

Search of human proteins with 239757879

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757879 PREDICTED: similar to Nuclear cap-binding protein
subunit 2-like [Homo sapiens]
         (114 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757879 PREDICTED: similar to Nuclear cap-binding protein s...   242   5e-65
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform...   125   9e-30
gi|110349727 nuclear cap binding protein subunit 2, 20kDa isofor...   104   1e-23
gi|29171740 phosphatidic acid phosphatase type 2B [Homo sapiens]       27   3.5  
gi|29171742 phosphatidic acid phosphatase type 2B [Homo sapiens]       27   3.5  
gi|11559923 eukaryotic translation initiation factor 4H isoform ...    27   4.6  
gi|55956788 nucleolin [Homo sapiens]                                   26   7.8  
gi|14702180 eukaryotic translation initiation factor 4H isoform ...    26   7.8  

>gi|239757879 PREDICTED: similar to Nuclear cap-binding protein
           subunit 2-like [Homo sapiens]
          Length = 114

 Score =  242 bits (617), Expect = 5e-65
 Identities = 114/114 (100%), Positives = 114/114 (100%)

Query: 1   MSKDLKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELLL 60
           MSKDLKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELLL
Sbjct: 1   MSKDLKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELLL 60

Query: 61  TGTCLDEWIICTDWDVGFREGQQYGRGKSGGQVRDEFREDFHSGRGGFGRQTQI 114
           TGTCLDEWIICTDWDVGFREGQQYGRGKSGGQVRDEFREDFHSGRGGFGRQTQI
Sbjct: 61  TGTCLDEWIICTDWDVGFREGQQYGRGKSGGQVRDEFREDFHSGRGGFGRQTQI 114


>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
           [Homo sapiens]
          Length = 156

 Score =  125 bits (313), Expect = 9e-30
 Identities = 69/149 (46%), Positives = 86/149 (57%), Gaps = 40/149 (26%)

Query: 5   LKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELL----- 59
           LK L  D  +ELS YRD  F G   +QEKLLK+S TL +GNLSFYTTEE+I+EL      
Sbjct: 6   LKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGD 65

Query: 60  -----------------------------------LTGTCLDEWIICTDWDVGFREGQQY 84
                                              + GT LD+ II TDWD GF+EG+QY
Sbjct: 66  IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQY 125

Query: 85  GRGKSGGQVRDEFREDFHSGRGGFGRQTQ 113
           GRG+SGGQVRDE+R+D+ +GRGG+G+  Q
Sbjct: 126 GRGRSGGQVRDEYRQDYDAGRGGYGKLAQ 154


>gi|110349727 nuclear cap binding protein subunit 2, 20kDa isoform 2
           [Homo sapiens]
          Length = 103

 Score =  104 bits (260), Expect = 1e-23
 Identities = 55/109 (50%), Positives = 69/109 (63%), Gaps = 13/109 (11%)

Query: 5   LKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELLLTGTC 64
           LK L  D  +ELS YRD  F G   +QEKLLK+S   N                 + GT 
Sbjct: 6   LKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSYAENAMRY-------------INGTR 52

Query: 65  LDEWIICTDWDVGFREGQQYGRGKSGGQVRDEFREDFHSGRGGFGRQTQ 113
           LD+ II TDWD GF+EG+QYGRG+SGGQVRDE+R+D+ +GRGG+G+  Q
Sbjct: 53  LDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQ 101


>gi|29171740 phosphatidic acid phosphatase type 2B [Homo sapiens]
          Length = 311

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 34 LLKESSTLNMGNLSFYTTEEKIHELLLTGTCLDEWIIC 71
          L+ E+ST+   +  FY  +E I   L TG  +++ ++C
Sbjct: 52 LIIETSTIKPYHRGFYCNDESIKYPLKTGETINDAVLC 89


>gi|29171742 phosphatidic acid phosphatase type 2B [Homo sapiens]
          Length = 311

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 34 LLKESSTLNMGNLSFYTTEEKIHELLLTGTCLDEWIIC 71
          L+ E+ST+   +  FY  +E I   L TG  +++ ++C
Sbjct: 52 LIIETSTIKPYHRGFYCNDESIKYPLKTGETINDAVLC 89


>gi|11559923 eukaryotic translation initiation factor 4H isoform 1
           [Homo sapiens]
          Length = 248

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 11/42 (26%)

Query: 77  GFREGQQYGRG-------KSGGQVRDEF----REDFHSGRGG 107
           GFR+G    RG       + G   RD+F    R+DF  GRGG
Sbjct: 127 GFRKGGPDDRGMGSSRESRGGWDSRDDFNSGFRDDFLGGRGG 168


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 37  ESSTLNMGNLSFYTTEEKIHELLLTGT 63
           ES TL + NLS+  TEE + E+    T
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKAT 510


>gi|14702180 eukaryotic translation initiation factor 4H isoform 2
           [Homo sapiens]
          Length = 228

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 76  VGFREGQQYGRG----KSGGQVRDEFREDFHSGRGG 107
           V   EG++  +G    + GG     FR+DF  GRGG
Sbjct: 113 VDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGRGG 148


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,716,819
Number of Sequences: 37866
Number of extensions: 191660
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 10
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.