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Search of human proteins with 239757854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens] 139 6e-34
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 73 4e-14
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 73 4e-14
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 73 4e-14
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ... 68 2e-12
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ... 68 2e-12
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ... 68 2e-12
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ... 66 5e-12
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ... 66 5e-12
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ... 66 5e-12
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ... 66 5e-12
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ... 66 5e-12
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ... 66 5e-12
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ... 64 2e-11
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ... 64 2e-11
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ... 64 2e-11
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ... 62 7e-11
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] 60 4e-10
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ... 60 4e-10
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ... 58 2e-09
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ... 58 2e-09
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ... 58 2e-09
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ... 53 5e-08
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ... 53 5e-08
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ... 53 5e-08
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ... 53 5e-08
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ... 53 5e-08
gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand... 52 8e-08
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens] 52 1e-07
gi|224465231 solute carrier family 9, member 11 [Homo sapiens] 26 5.9
>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 139 bits (349), Expect = 6e-34
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MRVVNTHNRYGKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTS 60
MRVVNTHNRYGKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTS
Sbjct: 1 MRVVNTHNRYGKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTS 60
Query: 61 TVDVQEVETA 70
TVDVQEVETA
Sbjct: 61 TVDVQEVETA 70
>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 73.2 bits (178), Expect = 4e-14
Identities = 39/48 (81%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELLHFH HTL+IIFLISSLV YIISL ILTTKL HTST D QEVET
Sbjct: 19 ELLHFHDHTLIIIFLISSLVLYIISL---ILTTKLMHTSTTDAQEVET 63
>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
sapiens]
Length = 64
Score = 73.2 bits (178), Expect = 4e-14
Identities = 39/48 (81%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELLHFH HTL+IIFLISSLV YIISL ILTTKL HTST D QEVET
Sbjct: 19 ELLHFHDHTLIIIFLISSLVLYIISL---ILTTKLMHTSTTDAQEVET 63
>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
sapiens]
Length = 64
Score = 73.2 bits (178), Expect = 4e-14
Identities = 39/48 (81%), Positives = 40/48 (83%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELLHFH HTL+IIFLISSLV YIISL ILTTKL HTST D QEVET
Sbjct: 19 ELLHFHDHTLIIIFLISSLVLYIISL---ILTTKLMHTSTTDAQEVET 63
>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 67.8 bits (164), Expect = 2e-12
Identities = 35/48 (72%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELL FH HTL+IIFLIS LV YIISL I TTKLTHTST+D QE++T
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISL---IFTTKLTHTSTIDAQEIQT 63
>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 67.8 bits (164), Expect = 2e-12
Identities = 35/48 (72%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELL FH HTL+IIFLIS LV YIISL I TTKLTHTST+D QE++T
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISL---IFTTKLTHTSTIDAQEIQT 63
>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
sapiens]
Length = 64
Score = 67.8 bits (164), Expect = 2e-12
Identities = 35/48 (72%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELL FH HTL+IIFLIS LV YIISL I TTKLTHTST+D QE++T
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISL---IFTTKLTHTSTIDAQEIQT 63
>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 66.2 bits (160), Expect = 5e-12
Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELL FH H L+II LISSLV Y+ISL ILTTKLTHTST+D QE++T
Sbjct: 19 ELLTFHGHALIIILLISSLVLYVISL---ILTTKLTHTSTIDAQEIKT 63
>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 66.2 bits (160), Expect = 5e-12
Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 11 GKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
G T S ELL FH H L+IIFLISSLV IISL ILTTKLTHT T+D QE+ET
Sbjct: 8 GLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISL---ILTTKLTHTGTIDAQEIET 63
>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
sapiens]
Length = 64
Score = 66.2 bits (160), Expect = 5e-12
Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELL FH H L+II LISSLV Y+ISL ILTTKLTHTST+D QE++T
Sbjct: 19 ELLTFHGHALIIILLISSLVLYVISL---ILTTKLTHTSTIDAQEIKT 63
>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
sapiens]
Length = 64
Score = 66.2 bits (160), Expect = 5e-12
Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 11 GKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
G T S ELL FH H L+IIFLISSLV IISL ILTTKLTHT T+D QE+ET
Sbjct: 8 GLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISL---ILTTKLTHTGTIDAQEIET 63
>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
sapiens]
Length = 64
Score = 66.2 bits (160), Expect = 5e-12
Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
ELL FH H L+II LISSLV Y+ISL ILTTKLTHTST+D QE++T
Sbjct: 19 ELLTFHGHALIIILLISSLVLYVISL---ILTTKLTHTSTIDAQEIKT 63
>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
sapiens]
Length = 64
Score = 66.2 bits (160), Expect = 5e-12
Identities = 38/59 (64%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Query: 11 GKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
G T S ELL FH H L+IIFLISSLV IISL ILTTKLTHT T+D QE+ET
Sbjct: 8 GLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISL---ILTTKLTHTGTIDAQEIET 63
>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
sapiens]
Length = 53
Score = 64.3 bits (155), Expect = 2e-11
Identities = 35/48 (72%), Positives = 38/48 (79%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
+LL FH H L+IIFLISSLV YIISL ILTTKLTHTST QE+ET
Sbjct: 8 KLLTFHDHALIIIFLISSLVLYIISL---ILTTKLTHTSTKHAQEIET 52
>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
sapiens]
Length = 53
Score = 64.3 bits (155), Expect = 2e-11
Identities = 35/48 (72%), Positives = 38/48 (79%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
+LL FH H L+IIFLISSLV YIISL ILTTKLTHTST QE+ET
Sbjct: 8 KLLTFHDHALIIIFLISSLVLYIISL---ILTTKLTHTSTKHAQEIET 52
>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
sapiens]
Length = 53
Score = 64.3 bits (155), Expect = 2e-11
Identities = 35/48 (72%), Positives = 38/48 (79%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
+LL FH H L+IIFLISSLV YIISL ILTTKLTHTST QE+ET
Sbjct: 8 KLLTFHDHALIIIFLISSLVLYIISL---ILTTKLTHTSTKHAQEIET 52
>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
sapiens]
Length = 415
Score = 62.4 bits (150), Expect = 7e-11
Identities = 31/44 (70%), Positives = 37/44 (84%), Gaps = 3/44 (6%)
Query: 26 FHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
FH HTL+I+FLISSLV Y+ISLILTI KLT+ ST+D QE+ET
Sbjct: 374 FHDHTLVIVFLISSLVLYVISLILTI---KLTNNSTIDAQEIET 414
>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 60.1 bits (144), Expect = 4e-10
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 3/44 (6%)
Query: 26 FHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
FH H L+I+FLISSLV Y+ISLILTI KLT+ ST+D QE+ET
Sbjct: 204 FHDHILVIVFLISSLVLYVISLILTI---KLTNNSTIDAQEIET 244
>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
sapiens]
Length = 433
Score = 60.1 bits (144), Expect = 4e-10
Identities = 30/44 (68%), Positives = 36/44 (81%), Gaps = 3/44 (6%)
Query: 26 FHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
FH H L+I+FLISSLV Y+ISLILTI KLT+ ST+D QE+ET
Sbjct: 392 FHDHILVIVFLISSLVLYVISLILTI---KLTNNSTIDAQEIET 432
>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 57.8 bits (138), Expect = 2e-09
Identities = 33/59 (55%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 11 GKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
G +S ELL FH H L+IIFLISSLV Y ISL IL T LTH S + QE+ET
Sbjct: 8 GLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISL---ILRTNLTHISAIHAQEIET 63
>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
sapiens]
Length = 64
Score = 57.8 bits (138), Expect = 2e-09
Identities = 33/59 (55%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 11 GKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
G +S ELL FH H L+IIFLISSLV Y ISL IL T LTH S + QE+ET
Sbjct: 8 GLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISL---ILRTNLTHISAIHAQEIET 63
>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
sapiens]
Length = 64
Score = 57.8 bits (138), Expect = 2e-09
Identities = 33/59 (55%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 11 GKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
G +S ELL FH H L+IIFLISSLV Y ISL IL T LTH S + QE+ET
Sbjct: 8 GLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISL---ILRTNLTHISAIHAQEIET 63
>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 53.1 bits (126), Expect = 5e-08
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
EL+ FH H L+IIFLI LV Y +L LT LTTKLT+TS DVQE+ET
Sbjct: 19 ELIIFHDHALIIIFLICFLVLY--ALFLT-LTTKLTNTSISDVQEIET 63
>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 63
Score = 53.1 bits (126), Expect = 5e-08
Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
EL+ FH H L+IIFLIS LV Y++ L LTTKL +TS D QE+ET
Sbjct: 11 ELIAFHDHALIIIFLISFLVLYVLFL---TLTTKLANTSITDAQEMET 55
>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
sapiens]
Length = 63
Score = 53.1 bits (126), Expect = 5e-08
Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
EL+ FH H L+IIFLIS LV Y++ L LTTKL +TS D QE+ET
Sbjct: 11 ELIAFHDHALIIIFLISFLVLYVLFL---TLTTKLANTSITDAQEMET 55
>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
sapiens]
Length = 64
Score = 53.1 bits (126), Expect = 5e-08
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
EL+ FH H L+IIFLI LV Y +L LT LTTKLT+TS DVQE+ET
Sbjct: 19 ELIIFHDHALIIIFLICFLVLY--ALFLT-LTTKLTNTSISDVQEIET 63
>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
sapiens]
Length = 63
Score = 53.1 bits (126), Expect = 5e-08
Identities = 28/48 (58%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
EL+ FH H L+IIFLIS LV Y++ L LTTKL +TS D QE+ET
Sbjct: 11 ELIAFHDHALIIIFLISFLVLYVLFL---TLTTKLANTSITDAQEMET 55
>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
neanderthalensis]
Length = 227
Score = 52.4 bits (124), Expect = 8e-08
Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
EL+ FH H LMIIFLI LV Y +L LT LTTKLT+TS D QE+ET
Sbjct: 19 ELIIFHDHALMIIFLICFLVLY--ALFLT-LTTKLTNTSISDAQEMET 63
>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
Length = 227
Score = 51.6 bits (122), Expect = 1e-07
Identities = 30/48 (62%), Positives = 35/48 (72%), Gaps = 3/48 (6%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
EL+ FH H LMIIFLI LV Y +L LT LTTKLT+T+ D QE+ET
Sbjct: 19 ELITFHDHALMIIFLICFLVLY--ALFLT-LTTKLTNTNISDAQEMET 63
>gi|224465231 solute carrier family 9, member 11 [Homo sapiens]
Length = 1124
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTS 60
EL H+ HT+ IF++ + V + L + +++ L H++
Sbjct: 326 ELSHYEFHTIPFIFILFTTVNLVRLLTILLVSPILMHSN 364
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,954,151
Number of Sequences: 37866
Number of extensions: 48813
Number of successful extensions: 293
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 31
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.