Search of human proteins with 239756243

Search of human proteins with 239756243

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens]          391   e-109
gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo ...    30   1.5  
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ...    29   2.0  
gi|116805350 homeo box (H6 family) 1 [Homo sapiens]                    29   2.6  
gi|38348282 RUN and FYVE domain containing 4 [Homo sapiens]            29   2.6  
gi|239753439 PREDICTED: hypothetical protein [Homo sapiens]            28   3.4  
gi|239748004 PREDICTED: hypothetical protein [Homo sapiens]            28   3.4  
gi|239741902 PREDICTED: hypothetical protein XP_002342344 [Homo ...    28   3.4  
gi|20270243 nuclear undecaprenyl pyrophosphate synthase 1 homolo...    28   3.4  
gi|116256487 patatin-like phospholipase domain containing 6 [Hom...    28   4.5  
gi|166795254 ankyrin repeat domain 13C [Homo sapiens]                  28   4.5  
gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo ...    28   5.9  
gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo ...    28   5.9  

>gi|239756243 PREDICTED: similar to hCG2038990 [Homo sapiens]
          Length = 185

 Score =  391 bits (1005), Expect = e-109
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MDLGLFLKCVFDFFTIPRRSCHGRPAACWQGRWLILLINGGPAESCSHCGLASMVHPMLV 60
           MDLGLFLKCVFDFFTIPRRSCHGRPAACWQGRWLILLINGGPAESCSHCGLASMVHPMLV
Sbjct: 1   MDLGLFLKCVFDFFTIPRRSCHGRPAACWQGRWLILLINGGPAESCSHCGLASMVHPMLV 60

Query: 61  DGLGRYASPERAARDSVCSGHQMSREEECVLTPGELTEAVAVGGVVTAGRKMLNSSEQRR 120
           DGLGRYASPERAARDSVCSGHQMSREEECVLTPGELTEAVAVGGVVTAGRKMLNSSEQRR
Sbjct: 61  DGLGRYASPERAARDSVCSGHQMSREEECVLTPGELTEAVAVGGVVTAGRKMLNSSEQRR 120

Query: 121 PHGVLDSVWPGIHGALCAGRWLRTSSGLHCWAHLPGSRLLARHCRAATPAAARVSKYGSG 180
           PHGVLDSVWPGIHGALCAGRWLRTSSGLHCWAHLPGSRLLARHCRAATPAAARVSKYGSG
Sbjct: 121 PHGVLDSVWPGIHGALCAGRWLRTSSGLHCWAHLPGSRLLARHCRAATPAAARVSKYGSG 180

Query: 181 SSFLL 185
           SSFLL
Sbjct: 181 SSFLL 185


>gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo
           sapiens]
          Length = 684

 Score = 29.6 bits (65), Expect = 1.5
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 50  GLASMVHPM--LVDGLGRYASPERAARDSVCSGHQMSREEECVLTPGELTEAVAVGGVVT 107
           GL  ++ P    V   G   S    AR+  C GH+ S  E+CV + G L+    V G+  
Sbjct: 244 GLPPVLSPPYDFVQPAGPQGSLATEAREMPC-GHRGSTREDCVCSRGALSPTAGVAGMGA 302

Query: 108 AGRKMLNSSEQRRPHGVLDSV 128
           A       +E+ R  G+ D +
Sbjct: 303 A-------AERERGPGLTDEM 316


>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
           sapiens]
          Length = 909

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 60  VDGLGRYASPERAARDSVCSGHQMSREEECVLTPGELTEAVAVGGVVTAGRKMLNSSEQR 119
           V   G   S    AR+  C GH+ S  E+CV + G L+    V G+  A       +E+ 
Sbjct: 256 VQPAGPQGSLATEAREMPC-GHRGSTREDCVCSRGALSPTAGVAGMGAA-------AERE 307

Query: 120 RPHGVLDSV 128
           R  G+ D +
Sbjct: 308 RGPGLTDEM 316


>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
          Length = 348

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 49  CGLASMVHPMLVDGLGRYASPERAARDSVCSGHQMSREE 87
           CG A+  +P    G G   SP+ + RDS  +G +M R E
Sbjct: 110 CGGAARWYPRAHGGYGGGLSPDTSDRDSPETGEEMGRAE 148


>gi|38348282 RUN and FYVE domain containing 4 [Homo sapiens]
          Length = 398

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 132 IHGALCAGRWLRTSSGLHC----WAHLPGSRLLARHCRAATPAAARVSKYGSGSSFLL 185
           + G L      RT+ G H     W+H+   RLL    R A   A   S+ GSG S +L
Sbjct: 143 VTGVLLVAEGQRTTEGTHKKEAEWSHV--QRLLMPSPRGAVEGAVSGSRQGSGGSSIL 198


>gi|239753439 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 128 VWPGIHGALCAGRWLRTSSGLHCWAHLPG-SRLLARH 163
           +W  +        WL +  GL CW    G SR LA+H
Sbjct: 78  LWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQH 114


>gi|239748004 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 128 VWPGIHGALCAGRWLRTSSGLHCWAHLPG-SRLLARH 163
           +W  +        WL +  GL CW    G SR LA+H
Sbjct: 78  LWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQH 114


>gi|239741902 PREDICTED: hypothetical protein XP_002342344 [Homo
           sapiens]
          Length = 144

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 128 VWPGIHGALCAGRWLRTSSGLHCWAHLPG-SRLLARH 163
           +W  +        WL +  GL CW    G SR LA+H
Sbjct: 78  LWQTLSDTCAEATWLLSGRGLDCWEEYEGQSRPLAQH 114


>gi|20270243 nuclear undecaprenyl pyrophosphate synthase 1 homolog
           [Homo sapiens]
          Length = 293

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 11/52 (21%)

Query: 123 GVLDSVWPGIHGALCAGR----WLRTSSGLHCWAHLPGSRLLARHCRAATPA 170
           G+ + VW  +H  LC  R    WLR   G   W       +  R CRAA+ A
Sbjct: 3   GLYELVWRVLHALLCLHRTLTSWLRVRFGTWNW-------IWRRCCRAASAA 47


>gi|116256487 patatin-like phospholipase domain containing 6 [Homo
            sapiens]
          Length = 1327

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 18   RRSCHGRPAACWQGRWLILLINGGPAESCSHCGLASMVHPM-----LVDG------LGRY 66
            R S   R A    G  + L++ GG A  CSH G+   +        LV G      +G  
Sbjct: 915  RHSDFSRLARVLTGNTIALVLGGGGARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIGAL 974

Query: 67   ASPERAARDSVCSGHQMSREEECVLTP 93
             + ER+A  +     + ++    VL P
Sbjct: 975  YAEERSASRTKQRAREWAKSMTSVLEP 1001


>gi|166795254 ankyrin repeat domain 13C [Homo sapiens]
          Length = 541

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 81  HQMSREEECVLTPGELTEAVAVGGVVTAGR 110
           H+ S+EE  +L PG+   A A+GG  T  R
Sbjct: 13  HKPSKEEGDLLEPGDEEAAAALGGTFTRSR 42


>gi|239746745 PREDICTED: hypothetical protein XP_002343805 [Homo
          sapiens]
          Length = 101

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 17 PRRSCHGRPAACWQGRWLILLINGGPA 43
          P  +CH RP   W GR L  L   GPA
Sbjct: 42 PALACHRRPRWRWTGRHLAALRGLGPA 68


>gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo
           sapiens]
          Length = 452

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 34  LILLINGGPAESCSHCGLASMVHPMLVDGLGRYASPERAARDSVCSGHQMSREEECVLTP 93
           L+LL+   P     HC +A    P +   + R  +P R             R+  C+L P
Sbjct: 246 LVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDH----------RKHTCLLAP 295

Query: 94  GELTEAVAV 102
             L EAV V
Sbjct: 296 ALLDEAVGV 304


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,185,069
Number of Sequences: 37866
Number of extensions: 374128
Number of successful extensions: 1056
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 14
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.