Guide to the Human Genome
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Name: LOC100286893 Sequence: fasta or formatted (144aa) NCBI GI: 239748004
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {144aa} PREDICTED: hypothetical protein XP_002342344
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         15           3
 C cysteine            2.1          3           1
 D aspartate           1.4          2           1
 E glutamate           6.9         10           2
 F phenylalanine       2.1          3           1
 G glycine             5.6          8           1
 H histidine           4.2          6           1
 I isoleucine          0.0          0           0
 K lysine              4.2          6           2
 L leucine            11.1         16           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline             4.9          7           1
 Q glutamine           8.3         12           1
 R arginine            5.6          8           2
 S serine             15.3         22           3
 T threonine           6.9         10           1
 V valine              4.2          6           1
 W tryptophan          5.6          8           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292720          1.000   PREDICTED: hypothetical protein 
LOC100286893          1.000   PREDICTED: hypothetical protein XP_002342344 
FAM5C                 0.025   family with sequence similarity 5, member C 
LOC100293218          0.011   PREDICTED: similar to hCG2038990 
MEFV                  0.011   Mediterranean fever protein 
DAZ1                  0.011   deleted in azoospermia 
DAZ4                  0.011   deleted in azoospermia 4 isoform 1 
SFRS16                0.007   splicing factor, arginine/serine-rich 16 
OBSCN                 0.007   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.007   obscurin, cytoskeletal calmodulin and titin-interac...
SPTBN1                0.007   spectrin, beta, non-erythrocytic 1 isoform 1 
EVI5L                 0.007   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.007   ecotropic viral integration site 5-like isoform 2 [H...
DAZ4                  0.007   deleted in azoospermia 4 isoform 2 
ZHX2                  0.007   zinc fingers and homeoboxes 2 
DAZ2                  0.007   deleted in azoospermia 2 isoform 1 
DAZ3                  0.007   deleted in azoospermia 3 
DAZ2                  0.007   deleted in azoospermia 2 isoform 3 
DAZ2                  0.007   deleted in azoospermia 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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