Guide to the Human Genome
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Name: LOC100293567 Sequence: fasta or formatted (270aa) NCBI GI: 239756165
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         17           2
 C cysteine            1.5          4           1
 D aspartate           1.9          5           1
 E glutamate           6.3         17           1
 F phenylalanine       5.2         14           2
 G glycine             5.9         16           2
 H histidine           3.7         10           1
 I isoleucine          4.8         13           1
 K lysine              6.7         18           1
 L leucine            10.7         29           2
 M methionine          1.9          5           1
 N asparagine          2.2          6           1
 P proline             7.4         20           1
 Q glutamine           3.7         10           1
 R arginine            6.7         18           2
 S serine             11.9         32           2
 T threonine           4.8         13           1
 V valine              4.4         12           1
 W tryptophan          1.5          4           1
 Y tyrosine            2.6          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291230          0.797   PREDICTED: hypothetical protein XP_002347504 
LOC100287446          0.795   PREDICTED: hypothetical protein XP_002343323 
YLPM1                 0.015   YLP motif containing 1 
PYROXD2               0.010   pyridine nucleotide-disulphide oxidoreductase domai...
TEX2                  0.010   testis expressed sequence 2 
C16orf45              0.008   hypothetical protein LOC89927 isoform 1 
LOC100133337          0.006   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          0.006   PREDICTED: similar to Os05g0242100 
LOC100133337          0.006   PREDICTED: similar to Os05g0242100 
LOC100133337          0.006   PREDICTED: hypothetical protein isoform 2 
LOC100133337          0.006   PREDICTED: hypothetical protein 
LOC100133337          0.006   PREDICTED: hypothetical protein 
LOC100133337          0.006   PREDICTED: similar to Os05g0242100 isoform 2 
LOC100133337          0.006   PREDICTED: similar to Os05g0242100 
LOC100133337          0.006   PREDICTED: similar to Os05g0242100 
ENOX2                 0.006   ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo...
ENOX2                 0.006   ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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