BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] (64 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ... 123 4e-29 gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ... 123 4e-29 gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ... 123 4e-29 gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ... 107 2e-24 gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ... 107 2e-24 gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ... 107 2e-24 gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 106 5e-24 gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 106 5e-24 gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 106 5e-24 gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ... 102 7e-23 gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ... 102 7e-23 gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ... 102 7e-23 gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ... 100 3e-22 gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ... 100 3e-22 gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ... 100 3e-22 gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ... 89 8e-19 gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ... 89 8e-19 gi|251831110 cytochrome c oxidase subunit II [Homo sapiens] 88 1e-18 gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand... 87 3e-18 gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ... 77 3e-15 gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ... 77 3e-15 gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ... 77 3e-15 gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ... 74 3e-14 gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ... 74 3e-14 gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ... 74 3e-14 gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ... 69 6e-13 gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] 69 8e-13 gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ... 69 8e-13 gi|239757854 PREDICTED: hypothetical protein [Homo sapiens] 66 5e-12 >gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 123 bits (308), Expect = 4e-29 Identities = 64/64 (100%), Positives = 64/64 (100%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE Sbjct: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 Query: 61 IKTV 64 IKTV Sbjct: 61 IKTV 64 >gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo sapiens] Length = 64 Score = 123 bits (308), Expect = 4e-29 Identities = 64/64 (100%), Positives = 64/64 (100%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE Sbjct: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 Query: 61 IKTV 64 IKTV Sbjct: 61 IKTV 64 >gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo sapiens] Length = 64 Score = 123 bits (308), Expect = 4e-29 Identities = 64/64 (100%), Positives = 64/64 (100%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE Sbjct: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 Query: 61 IKTV 64 IKTV Sbjct: 61 IKTV 64 >gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 107 bits (268), Expect = 2e-24 Identities = 56/64 (87%), Positives = 59/64 (92%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MA+PVQLGLQD TSPIIEELLTFH HALIII LISSLVL +ISLILTTKLTHT TIDAQE Sbjct: 1 MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo sapiens] Length = 64 Score = 107 bits (268), Expect = 2e-24 Identities = 56/64 (87%), Positives = 59/64 (92%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MA+PVQLGLQD TSPIIEELLTFH HALIII LISSLVL +ISLILTTKLTHT TIDAQE Sbjct: 1 MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo sapiens] Length = 64 Score = 107 bits (268), Expect = 2e-24 Identities = 56/64 (87%), Positives = 59/64 (92%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MA+PVQLGLQD TSPIIEELLTFH HALIII LISSLVL +ISLILTTKLTHT TIDAQE Sbjct: 1 MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit II [Homo sapiens] Length = 64 Score = 106 bits (264), Expect = 5e-24 Identities = 54/64 (84%), Positives = 57/64 (89%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHP QLGLQDATSPIIEELL FH H LIII LISSLVLY+ISLILTTKL HTST DAQE Sbjct: 1 MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60 Query: 61 IKTV 64 ++TV Sbjct: 61 VETV 64 >gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo sapiens] Length = 64 Score = 106 bits (264), Expect = 5e-24 Identities = 54/64 (84%), Positives = 57/64 (89%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHP QLGLQDATSPIIEELL FH H LIII LISSLVLY+ISLILTTKL HTST DAQE Sbjct: 1 MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60 Query: 61 IKTV 64 ++TV Sbjct: 61 VETV 64 >gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo sapiens] Length = 64 Score = 106 bits (264), Expect = 5e-24 Identities = 54/64 (84%), Positives = 57/64 (89%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHP QLGLQDATSPIIEELL FH H LIII LISSLVLY+ISLILTTKL HTST DAQE Sbjct: 1 MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60 Query: 61 IKTV 64 ++TV Sbjct: 61 VETV 64 >gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit II [Homo sapiens] Length = 64 Score = 102 bits (254), Expect = 7e-23 Identities = 54/64 (84%), Positives = 55/64 (85%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHPVQLGLQDA SPIIEELLTFH HALIII LISSLVLY ISLIL T LTH S I AQE Sbjct: 1 MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo sapiens] Length = 64 Score = 102 bits (254), Expect = 7e-23 Identities = 54/64 (84%), Positives = 55/64 (85%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHPVQLGLQDA SPIIEELLTFH HALIII LISSLVLY ISLIL T LTH S I AQE Sbjct: 1 MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo sapiens] Length = 64 Score = 102 bits (254), Expect = 7e-23 Identities = 54/64 (84%), Positives = 55/64 (85%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAHPVQLGLQDA SPIIEELLTFH HALIII LISSLVLY ISLIL T LTH S I AQE Sbjct: 1 MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 100 bits (248), Expect = 3e-22 Identities = 52/64 (81%), Positives = 55/64 (85%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAH VQLGLQD T I+EELLTFH H LIII LIS LVLY+ISLI TTKLTHTSTIDAQE Sbjct: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IQTV 64 >gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 100 bits (248), Expect = 3e-22 Identities = 52/64 (81%), Positives = 55/64 (85%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAH VQLGLQD T I+EELLTFH H LIII LIS LVLY+ISLI TTKLTHTSTIDAQE Sbjct: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IQTV 64 >gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo sapiens] Length = 64 Score = 100 bits (248), Expect = 3e-22 Identities = 52/64 (81%), Positives = 55/64 (85%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAH VQLGLQD T I+EELLTFH H LIII LIS LVLY+ISLI TTKLTHTSTIDAQE Sbjct: 1 MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IQTV 64 >gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2 [Homo sapiens] Length = 64 Score = 89.0 bits (219), Expect = 8e-19 Identities = 46/64 (71%), Positives = 51/64 (79%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAH Q+GLQDATSPIIEEL+ FH HALIII LI LVLY + L LTTKLT+TS D QE Sbjct: 1 MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo sapiens] Length = 64 Score = 89.0 bits (219), Expect = 8e-19 Identities = 46/64 (71%), Positives = 51/64 (79%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAH Q+GLQDATSPIIEEL+ FH HALIII LI LVLY + L LTTKLT+TS D QE Sbjct: 1 MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60 Query: 61 IKTV 64 I+TV Sbjct: 61 IETV 64 >gi|251831110 cytochrome c oxidase subunit II [Homo sapiens] Length = 227 Score = 88.2 bits (217), Expect = 1e-18 Identities = 44/64 (68%), Positives = 53/64 (82%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAH Q+GLQDATSPI+EEL+TFH HAL+II LI LVLY + L LTTKLT+T+ DAQE Sbjct: 1 MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQE 60 Query: 61 IKTV 64 ++TV Sbjct: 61 METV 64 >gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neanderthalensis] Length = 227 Score = 87.0 bits (214), Expect = 3e-18 Identities = 44/64 (68%), Positives = 52/64 (81%) Query: 1 MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60 MAH Q+GLQDATSPI+EEL+ FH HAL+II LI LVLY + L LTTKLT+TS DAQE Sbjct: 1 MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60 Query: 61 IKTV 64 ++TV Sbjct: 61 METV 64 >gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo sapiens] Length = 53 Score = 77.0 bits (188), Expect = 3e-15 Identities = 40/50 (80%), Positives = 43/50 (86%) Query: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 P +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST AQEI+TV Sbjct: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53 >gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo sapiens] Length = 53 Score = 77.0 bits (188), Expect = 3e-15 Identities = 40/50 (80%), Positives = 43/50 (86%) Query: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 P +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST AQEI+TV Sbjct: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53 >gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo sapiens] Length = 53 Score = 77.0 bits (188), Expect = 3e-15 Identities = 40/50 (80%), Positives = 43/50 (86%) Query: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 P +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST AQEI+TV Sbjct: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53 >gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit II [Homo sapiens] Length = 63 Score = 73.6 bits (179), Expect = 3e-14 Identities = 38/52 (73%), Positives = 43/52 (82%) Query: 13 TSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 TSPIIEEL+ FH HALIII LIS LVLYV+ L LTTKL +TS DAQE++TV Sbjct: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56 >gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo sapiens] Length = 63 Score = 73.6 bits (179), Expect = 3e-14 Identities = 38/52 (73%), Positives = 43/52 (82%) Query: 13 TSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 TSPIIEEL+ FH HALIII LIS LVLYV+ L LTTKL +TS DAQE++TV Sbjct: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56 >gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo sapiens] Length = 63 Score = 73.6 bits (179), Expect = 3e-14 Identities = 38/52 (73%), Positives = 43/52 (82%) Query: 13 TSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 TSPIIEEL+ FH HALIII LIS LVLYV+ L LTTKL +TS DAQE++TV Sbjct: 5 TSPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56 >gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo sapiens] Length = 415 Score = 69.3 bits (168), Expect = 6e-13 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV Sbjct: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415 >gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] Length = 245 Score = 68.9 bits (167), Expect = 8e-13 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV Sbjct: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245 >gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo sapiens] Length = 433 Score = 68.9 bits (167), Expect = 8e-13 Identities = 34/48 (70%), Positives = 41/48 (85%) Query: 17 IEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64 + + +TFH H L+I+ LISSLVLYVISLILT KLT+ STIDAQEI+TV Sbjct: 386 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433 >gi|239757854 PREDICTED: hypothetical protein [Homo sapiens] Length = 70 Score = 66.2 bits (160), Expect = 5e-12 Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 3/48 (6%) Query: 19 ELLTFHGHALIIILLISSLVLYVISL---ILTTKLTHTSTIDAQEIKT 63 ELL FH H L+II LISSLV Y+ISL ILTTKLTHTST+D QE++T Sbjct: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.324 0.138 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,825,872 Number of Sequences: 37866 Number of extensions: 44937 Number of successful extensions: 209 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 179 Number of HSP's gapped (non-prelim): 29 length of query: 64 length of database: 18,247,518 effective HSP length: 37 effective length of query: 27 effective length of database: 16,846,476 effective search space: 454854852 effective search space used: 454854852 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.