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Search of human proteins with 118766332
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118766332 hypothetical protein LOC286336 [Homo sapiens]
(283 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118766332 hypothetical protein LOC286336 [Homo sapiens] 589 e-168
gi|63003928 hypothetical protein LOC149297 [Homo sapiens] 393 e-110
gi|68077164 Yeast Sps1/Ste20-related kinase 4 isoform 1 [Homo sa... 30 2.4
gi|189491742 ataxin 7 isoform b [Homo sapiens] 29 4.1
gi|4506797 ataxin 7 isoform a [Homo sapiens] 29 4.1
gi|110349719 titin isoform N2-A [Homo sapiens] 28 7.0
gi|110349717 titin isoform novex-2 [Homo sapiens] 28 7.0
gi|110349713 titin isoform novex-1 [Homo sapiens] 28 7.0
gi|110349715 titin isoform N2-B [Homo sapiens] 28 7.0
gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo ... 28 9.1
gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo s... 28 9.1
>gi|118766332 hypothetical protein LOC286336 [Homo sapiens]
Length = 283
Score = 589 bits (1518), Expect = e-168
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 1 MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSV 60
MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSV
Sbjct: 1 MPGFFCDCWPSLEIRALLYAMGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSV 60
Query: 61 VLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGK 120
VLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGK
Sbjct: 61 VLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGK 120
Query: 121 IQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL 180
IQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL
Sbjct: 121 IQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKL 180
Query: 181 TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQP 240
TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQP
Sbjct: 181 TNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQP 240
Query: 241 KILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR 283
KILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR
Sbjct: 241 KILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPKHR 283
>gi|63003928 hypothetical protein LOC149297 [Homo sapiens]
Length = 261
Score = 393 bits (1010), Expect = e-110
Identities = 188/261 (72%), Positives = 222/261 (85%)
Query: 21 MGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPI 80
MGCIQSI KAR+ RE I V DV A+ID PT I+E+S +VLRY+TP+F+ASA+VVMPPI
Sbjct: 1 MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPI 60
Query: 81 PKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTE 140
P+ ETWVVGWIQAC+ MEF+N Y + GMSSWELPDL+EG+++AISDSDGV+YPWYGNTTE
Sbjct: 61 PRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTE 120
Query: 141 TCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTST 200
T T+VGPT + S+F +SMNDNFYPSVTWAVPVS+SNV LT I RDQSFTTWLVA NT+T
Sbjct: 121 TVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTT 180
Query: 201 NDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNAN 260
+ IILQT+ WRM++ IEV+P + LGQRARL Q+QP+ILS+ EPIPP+ALVKPNAN
Sbjct: 181 KEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEPIPPNALVKPNAN 240
Query: 261 DAQVLMWRPKYGQPLVVIPPK 281
DAQVLMWRPK G PLVVIPPK
Sbjct: 241 DAQVLMWRPKRGPPLVVIPPK 261
>gi|68077164 Yeast Sps1/Ste20-related kinase 4 isoform 1 [Homo
sapiens]
Length = 1328
Score = 30.0 bits (66), Expect = 2.4
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 43 VKASIDPVPTSIDE---SSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHMEF 99
VK+ +DP S D S ++ +T H R + K+E W I+ C+ +E
Sbjct: 269 VKSLMDPTLRSSDGFIWSRNMCSFPKTNHHRQCLE-------KEENWKSKEIEECNKIEI 321
Query: 100 YNQYGEQGMSSWELPDLQEGKIQAISDSD 128
+ E+G S +L+EG I A+ + D
Sbjct: 322 --THFEKGQSLVSFENLKEGNIPAVREED 348
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 227 QRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPK 281
++ +R P +Q P+ L P PP +P+ N V+ P +P V PK
Sbjct: 395 EKELIRHPDSQQPPQPLRDPHPAPPRTSQEPHQNPHGVI---PSESKPFVASKPK 446
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 29.3 bits (64), Expect = 4.1
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 227 QRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMWRPKYGQPLVVIPPK 281
++ +R P +Q P+ L P PP +P+ N V+ P +P V PK
Sbjct: 395 EKELIRHPDSQQPPQPLRDPHPAPPRTSQEPHQNPHGVI---PSESKPFVASKPK 446
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.5 bits (62), Expect = 7.0
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 27/247 (10%)
Query: 38 ITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGW------I 91
+TV+DV PV S + L + P + + + K+ET + W I
Sbjct: 20467 VTVLDVPGPPGPVEISNVSAEKATLTWTPPLEDGGSPIKSYILEKRETSRLLWTVVSEDI 20526
Query: 92 QACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRD 151
Q+C H+ G + + ++ A++ G P + GP
Sbjct: 20527 QSCRHVATKLIQGNEYIF----------RVSAVNHY-GKGEPVQSEPVKMVDRFGPPGPP 20575
Query: 152 SKFIISMNDNFYPSVTWAVPVSESNVAKLTNIY---RDQSFTTWLVATNTSTNDMIILQT 208
K +S +V+W PV + +++T + R++ W+ A T +D+ T
Sbjct: 20576 EKPEVSNVTKNTATVSWKRPVDDGG-SEITGYHVERREKKSLRWVRAIKTPVSDLRCKVT 20634
Query: 209 -LHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMW 267
L V+ G P ++ +L K+ PP P+ D
Sbjct: 20635 GLQEGSTYEFRVSAENRAG-----IGPPSEASDSVLMKDAAYPPGPPSNPHVTDTTKKSA 20689
Query: 268 RPKYGQP 274
+G+P
Sbjct: 20690 SLAWGKP 20696
Score = 28.1 bits (61), Expect = 9.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 38 ITVIDVKASIDPV-PTSIDE--SSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGWIQAC 94
ITVI + P P DE + SV+L + P ++ I K+ET W C
Sbjct: 27649 ITVITLGPPSKPKGPIRFDEIKADSVILSWDVPEDNGGGEITCYSIEKRETSQTNWKMVC 27708
Query: 95 S 95
S
Sbjct: 27709 S 27709
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 28.5 bits (62), Expect = 7.0
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 27/247 (10%)
Query: 38 ITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGW------I 91
+TV+DV PV S + L + P + + + K+ET + W I
Sbjct: 14162 VTVLDVPGPPGPVEISNVSAEKATLTWTPPLEDGGSPIKSYILEKRETSRLLWTVVSEDI 14221
Query: 92 QACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRD 151
Q+C H+ G + + ++ A++ G P + GP
Sbjct: 14222 QSCRHVATKLIQGNEYIF----------RVSAVNHY-GKGEPVQSEPVKMVDRFGPPGPP 14270
Query: 152 SKFIISMNDNFYPSVTWAVPVSESNVAKLTNIY---RDQSFTTWLVATNTSTNDMIILQT 208
K +S +V+W PV + +++T + R++ W+ A T +D+ T
Sbjct: 14271 EKPEVSNVTKNTATVSWKRPVDDGG-SEITGYHVERREKKSLRWVRAIKTPVSDLRCKVT 14329
Query: 209 -LHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMW 267
L V+ G P ++ +L K+ PP P+ D
Sbjct: 14330 GLQEGSTYEFRVSAENRAG-----IGPPSEASDSVLMKDAAYPPGPPSNPHVTDTTKKSA 14384
Query: 268 RPKYGQP 274
+G+P
Sbjct: 14385 SLAWGKP 14391
Score = 28.1 bits (61), Expect = 9.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 38 ITVIDVKASIDPV-PTSIDE--SSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGWIQAC 94
ITVI + P P DE + SV+L + P ++ I K+ET W C
Sbjct: 21344 ITVITLGPPSKPKGPIRFDEIKADSVILSWDVPEDNGGGEITCYSIEKRETSQTNWKMVC 21403
Query: 95 S 95
S
Sbjct: 21404 S 21404
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 28.5 bits (62), Expect = 7.0
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 27/247 (10%)
Query: 38 ITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGW------I 91
+TV+DV PV S + L + P + + + K+ET + W I
Sbjct: 14095 VTVLDVPGPPGPVEISNVSAEKATLTWTPPLEDGGSPIKSYILEKRETSRLLWTVVSEDI 14154
Query: 92 QACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRD 151
Q+C H+ G + + ++ A++ G P + GP
Sbjct: 14155 QSCRHVATKLIQGNEYIF----------RVSAVNHY-GKGEPVQSEPVKMVDRFGPPGPP 14203
Query: 152 SKFIISMNDNFYPSVTWAVPVSESNVAKLTNIY---RDQSFTTWLVATNTSTNDMIILQT 208
K +S +V+W PV + +++T + R++ W+ A T +D+ T
Sbjct: 14204 EKPEVSNVTKNTATVSWKRPVDDGG-SEITGYHVERREKKSLRWVRAIKTPVSDLRCKVT 14262
Query: 209 -LHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMW 267
L V+ G P ++ +L K+ PP P+ D
Sbjct: 14263 GLQEGSTYEFRVSAENRAG-----IGPPSEASDSVLMKDAAYPPGPPSNPHVTDTTKKSA 14317
Query: 268 RPKYGQP 274
+G+P
Sbjct: 14318 SLAWGKP 14324
Score = 28.1 bits (61), Expect = 9.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 38 ITVIDVKASIDPV-PTSIDE--SSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGWIQAC 94
ITVI + P P DE + SV+L + P ++ I K+ET W C
Sbjct: 21277 ITVITLGPPSKPKGPIRFDEIKADSVILSWDVPEDNGGGEITCYSIEKRETSQTNWKMVC 21336
Query: 95 S 95
S
Sbjct: 21337 S 21337
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 28.5 bits (62), Expect = 7.0
Identities = 48/247 (19%), Positives = 87/247 (35%), Gaps = 27/247 (10%)
Query: 38 ITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGW------I 91
+TV+DV PV S + L + P + + + K+ET + W I
Sbjct: 13970 VTVLDVPGPPGPVEISNVSAEKATLTWTPPLEDGGSPIKSYILEKRETSRLLWTVVSEDI 14029
Query: 92 QACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRD 151
Q+C H+ G + + ++ A++ G P + GP
Sbjct: 14030 QSCRHVATKLIQGNEYIF----------RVSAVNHY-GKGEPVQSEPVKMVDRFGPPGPP 14078
Query: 152 SKFIISMNDNFYPSVTWAVPVSESNVAKLTNIY---RDQSFTTWLVATNTSTNDMIILQT 208
K +S +V+W PV + +++T + R++ W+ A T +D+ T
Sbjct: 14079 EKPEVSNVTKNTATVSWKRPVDDGG-SEITGYHVERREKKSLRWVRAIKTPVSDLRCKVT 14137
Query: 209 -LHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNANDAQVLMW 267
L V+ G P ++ +L K+ PP P+ D
Sbjct: 14138 GLQEGSTYEFRVSAENRAG-----IGPPSEASDSVLMKDAAYPPGPPSNPHVTDTTKKSA 14192
Query: 268 RPKYGQP 274
+G+P
Sbjct: 14193 SLAWGKP 14199
Score = 28.1 bits (61), Expect = 9.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 38 ITVIDVKASIDPV-PTSIDE--SSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGWIQAC 94
ITVI + P P DE + SV+L + P ++ I K+ET W C
Sbjct: 21152 ITVITLGPPSKPKGPIRFDEIKADSVILSWDVPEDNGGGEITCYSIEKRETSQTNWKMVC 21211
Query: 95 S 95
S
Sbjct: 21212 S 21212
>gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo
sapiens]
Length = 359
Score = 28.1 bits (61), Expect = 9.1
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 160 DNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEV 219
D+ +V+ +V S+ + +L +IYR QS+ T + + ++I W ++L +V
Sbjct: 177 DHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSV-----ELINDSLYDWHVKLQ-KV 230
Query: 220 NPNRPL 225
+P+ PL
Sbjct: 231 DPDSPL 236
>gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo
sapiens]
Length = 375
Score = 28.1 bits (61), Expect = 9.1
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 160 DNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILQTLHWRMQLSIEV 219
D+ +V+ +V S+ + +L +IYR QS+ T + + ++I W ++L +V
Sbjct: 193 DHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSV-----ELINDSLYDWHVKLQ-KV 246
Query: 220 NPNRPL 225
+P+ PL
Sbjct: 247 DPDSPL 252
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,461,011
Number of Sequences: 37866
Number of extensions: 498182
Number of successful extensions: 1121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 36
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.