Search of human proteins with 239753687

Search of human proteins with 239753687

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753687 PREDICTED: similar to Putative neugrin-like
protein [Homo sapiens]
         (258 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753687 PREDICTED: similar to Putative neugrin-like protein...   512   e-145
gi|239748291 PREDICTED: similar to Putative neugrin-like protein...   360   e-100
gi|239742191 PREDICTED: similar to Putative neugrin-like protein...   360   e-100
gi|75677385 neugrin [Homo sapiens]                                    353   8e-98
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]       32   0.72 
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex...    29   3.6  
gi|156105693 PPAR-alpha interacting complex protein 285 isoform ...    29   3.6  
gi|156105695 PPAR-alpha interacting complex protein 285 isoform ...    29   3.6  
gi|154090997 coiled-coil domain containing 13 [Homo sapiens]           28   7.9  

>gi|239753687 PREDICTED: similar to Putative neugrin-like protein
           [Homo sapiens]
          Length = 258

 Score =  512 bits (1319), Expect = e-145
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MLVTLSLXIAGXVSAAITRCTFETHWVAGPGLTGREPEEGELQEVESTLPRQKKAIRFQK 60
           MLVTLSL IAG VSAAITRCTFETHWVAGPGLTGREPEEGELQEVESTLPRQKKAIRFQK
Sbjct: 1   MLVTLSLXIAGXVSAAITRCTFETHWVAGPGLTGREPEEGELQEVESTLPRQKKAIRFQK 60

Query: 61  IRRQMEAPAWLVPRLMEGFDVCTDVIRSFLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQ 120
           IRRQMEAPAWLVPRLMEGFDVCTDVIRSFLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQ
Sbjct: 61  IRRQMEAPAWLVPRLMEGFDVCTDVIRSFLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQ 120

Query: 121 LQGSGNTWKLLPAGHSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNK 180
           LQGSGNTWKLLPAGHSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNK
Sbjct: 121 LQGSGNTWKLLPAGHSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNK 180

Query: 181 GIQDLEESFVTVAAVLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQS 240
           GIQDLEESFVTVAAVLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQS
Sbjct: 181 GIQDLEESFVTVAAVLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQS 240

Query: 241 SAEGRELFDSSGNFLYRI 258
           SAEGRELFDSSGNFLYRI
Sbjct: 241 SAEGRELFDSSGNFLYRI 258


>gi|239748291 PREDICTED: similar to Putative neugrin-like protein
           [Homo sapiens]
          Length = 184

 Score =  360 bits (923), Expect = e-100
 Identities = 181/184 (98%), Positives = 181/184 (98%), Gaps = 1/184 (0%)

Query: 76  MEGFDVCTDVIRS-FLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 134
           MEGFDVCTDVIR   LKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG
Sbjct: 1   MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 60

Query: 135 HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 194
           HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA
Sbjct: 61  HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 120

Query: 195 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 254
           VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF
Sbjct: 121 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 180

Query: 255 LYRI 258
           LYRI
Sbjct: 181 LYRI 184


>gi|239742191 PREDICTED: similar to Putative neugrin-like protein
           [Homo sapiens]
          Length = 184

 Score =  360 bits (923), Expect = e-100
 Identities = 181/184 (98%), Positives = 181/184 (98%), Gaps = 1/184 (0%)

Query: 76  MEGFDVCTDVIRS-FLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 134
           MEGFDVCTDVIR   LKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG
Sbjct: 1   MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 60

Query: 135 HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 194
           HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA
Sbjct: 61  HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 120

Query: 195 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 254
           VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF
Sbjct: 121 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 180

Query: 255 LYRI 258
           LYRI
Sbjct: 181 LYRI 184


>gi|75677385 neugrin [Homo sapiens]
          Length = 291

 Score =  353 bits (906), Expect = 8e-98
 Identities = 200/291 (68%), Positives = 213/291 (73%), Gaps = 33/291 (11%)

Query: 1   MLVTLSLXIAGXVSAAITRCTFETHWVAGPGLTGREP--------EEGELQEVESTLPRQ 52
           M VTLSL + G V AA+TRC F T  VAGPG  GREP        EE ELQEVESTL RQ
Sbjct: 1   MAVTLSLLLGGRVCAAVTRCGFATRGVAGPGPIGREPDPDSDWEPEERELQEVESTLKRQ 60

Query: 53  KKAIRFQKIRRQMEAP------------------------AWLVPRLMEGFDVCTDVIRS 88
           K+AIRFQKIRRQMEAP                        +W VPRL EGFDV TDVIR 
Sbjct: 61  KQAIRFQKIRRQMEAPGAPPRTLTWEAMEQIRYLHEEFPESWSVPRLAEGFDVSTDVIRR 120

Query: 89  FLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAGHSVSGSLLMLGHEA 148
            LK KF+PTLEQKLK DQKVLKKAGLA+SLQ L+GSGNT KLLPAGHSVSGSLLM GHEA
Sbjct: 121 VLKSKFLPTLEQKLKQDQKVLKKAGLAHSLQHLRGSGNTSKLLPAGHSVSGSLLMPGHEA 180

Query: 149 SSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAAVLGHQRKLQKYSSD 208
           SSK PN+ST LKVIES+T+RTNTPR  KGRNK IQDLEESFV VAA LGH R+LQKYSSD
Sbjct: 181 SSKDPNHSTALKVIESDTHRTNTPRRRKGRNKEIQDLEESFVPVAAPLGHPRELQKYSSD 240

Query: 209 CESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAE-GRELFDSSGNFLYRI 258
            ES R TG G LPS QKLEELKA EPDN      + GRE FDS+GNFLYRI
Sbjct: 241 SESPRGTGSGALPSGQKLEELKAEEPDNFSSKVVQRGREFFDSNGNFLYRI 291


>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
          Length = 1495

 Score = 31.6 bits (70), Expect = 0.72
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 209 CESIRRTGHGGLPSDQKLEELKAGEPDNQQQSS 241
           C ++RR  H  L S +   E++AG P+N++Q S
Sbjct: 148 CRTVRRLFHKDLTSLETTSEMEAGSPENKKQRS 180


>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
           exchange factor [Homo sapiens]
          Length = 1386

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 25  HWVAGPGLTGREPEEGELQE-------VESTLPRQKKAIRFQKIRRQMEAPAWLVPRL 75
           HW  GPG  GRE  E  +         +     +Q+ A R Q+++R++    W  P L
Sbjct: 253 HWAEGPGTGGREMVEEAIVSMTAVAWYINDMKRKQEHAARLQEVQRRL--GGWTGPEL 308


>gi|156105693 PPAR-alpha interacting complex protein 285 isoform 1
            [Homo sapiens]
          Length = 2649

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 37   PEE----GELQEVESTLPRQKKAIRFQKIRRQMEAPAWLVPRLMEGFDV----CTDVIRS 88
            PEE    G L  VE  LP+Q   +R ++  R +E  + LV  +  G  V    C  +   
Sbjct: 2079 PEEVLRPGTLFTVE-LLPKQLPDLRKEEAVRGLEEASPLVTSIALGRPVPQPLCRVIPSR 2137

Query: 89   FLKGKF--VPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAGHSV 137
            FL+ +   +P    KL P Q V  +  L      +QG   T K +   H V
Sbjct: 2138 FLERQTYNIPGGRHKLNPSQNVAVREALEKPFTVIQGPPGTGKTIVGLHIV 2188


>gi|156105695 PPAR-alpha interacting complex protein 285 isoform 2
            [Homo sapiens]
          Length = 2080

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 11/111 (9%)

Query: 37   PEE----GELQEVESTLPRQKKAIRFQKIRRQMEAPAWLVPRLMEGFDV----CTDVIRS 88
            PEE    G L  VE  LP+Q   +R ++  R +E  + LV  +  G  V    C  +   
Sbjct: 1510 PEEVLRPGTLFTVE-LLPKQLPDLRKEEAVRGLEEASPLVTSIALGRPVPQPLCRVIPSR 1568

Query: 89   FLKGKF--VPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAGHSV 137
            FL+ +   +P    KL P Q V  +  L      +QG   T K +   H V
Sbjct: 1569 FLERQTYNIPGGRHKLNPSQNVAVREALEKPFTVIQGPPGTGKTIVGLHIV 1619


>gi|154090997 coiled-coil domain containing 13 [Homo sapiens]
          Length = 715

 Score = 28.1 bits (61), Expect = 7.9
 Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)

Query: 81  VCTDVIRSFLKGKFVPTLEQKLKPDQKVL-KKAGLAYSLQQLQGSGNTWK-----LLPAG 134
           V T++  S L+ + + +++Q+L+  QKVL ++ G   ++QQL  S  TW+     +L   
Sbjct: 215 VATNLKMSDLRNQ-IQSVKQELRMAQKVLAREVGEDINVQQLLSSPGTWRGRAQQILVLQ 273

Query: 135 HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKG---IQDLEESFVT 191
             V      LG   S  A   S  L V          PR    + K    I+ LE     
Sbjct: 274 SKVQELEKQLGQARSQSAGTASDELSVYPD-------PRKLSAQEKNLLRIRSLERE--- 323

Query: 192 VAAVLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELK 230
                  Q  L+K +S+ + ++R          +LEELK
Sbjct: 324 ------KQEGLEKLASERDVLQR----------ELEELK 346


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,911,320
Number of Sequences: 37866
Number of extensions: 444318
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 9
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.