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Search of human proteins with 239753286
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753286 PREDICTED: COBW domain containing 2 [Homo sapiens]
(77 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens] 157 2e-39
gi|239753286 PREDICTED: COBW domain containing 2 [Homo sapiens] 157 2e-39
gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens] 128 1e-30
gi|33469141 COBW domain-containing protein 2 [Homo sapiens] 128 1e-30
gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens] 128 1e-30
gi|146231952 COBW domain containing 6 [Homo sapiens] 125 1e-29
gi|148727351 COBW domain containing 3 [Homo sapiens] 125 1e-29
gi|119120938 COBW domain containing 5 [Homo sapiens] 125 1e-29
gi|11559925 X-prolyl aminopeptidase (aminopeptidase P) 3, putati... 27 2.7
gi|45580709 unc-93 homolog B1 [Homo sapiens] 27 3.5
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 26 6.0
gi|224809576 immunity-related GTPase family, M [Homo sapiens] 26 7.9
>gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens]
Length = 359
Score = 157 bits (396), Expect = 2e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MYFKRAARAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGEL 60
MYFKRAARAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGEL
Sbjct: 1 MYFKRAARAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGEL 60
Query: 61 YEEWLELRNGCLCCSVK 77
YEEWLELRNGCLCCSVK
Sbjct: 61 YEEWLELRNGCLCCSVK 77
>gi|239753286 PREDICTED: COBW domain containing 2 [Homo sapiens]
Length = 77
Score = 157 bits (396), Expect = 2e-39
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MYFKRAARAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGEL 60
MYFKRAARAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGEL
Sbjct: 1 MYFKRAARAFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGEL 60
Query: 61 YEEWLELRNGCLCCSVK 77
YEEWLELRNGCLCCSVK
Sbjct: 61 YEEWLELRNGCLCCSVK 77
>gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]
Length = 376
Score = 128 bits (321), Expect = 1e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 16 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 75
GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS
Sbjct: 52 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 111
Query: 76 VK 77
VK
Sbjct: 112 VK 113
>gi|33469141 COBW domain-containing protein 2 [Homo sapiens]
Length = 395
Score = 128 bits (321), Expect = 1e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 16 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 75
GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS
Sbjct: 52 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 111
Query: 76 VK 77
VK
Sbjct: 112 VK 113
>gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]
Length = 395
Score = 128 bits (321), Expect = 1e-30
Identities = 62/62 (100%), Positives = 62/62 (100%)
Query: 16 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 75
GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS
Sbjct: 52 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 111
Query: 76 VK 77
VK
Sbjct: 112 VK 113
>gi|146231952 COBW domain containing 6 [Homo sapiens]
Length = 395
Score = 125 bits (313), Expect = 1e-29
Identities = 61/62 (98%), Positives = 61/62 (98%)
Query: 16 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 75
GAGKTTLLNYILTEQHSKRVAVILNE GEGSALEKSLAVSQGGELYEEWLELRNGCLCCS
Sbjct: 52 GAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 111
Query: 76 VK 77
VK
Sbjct: 112 VK 113
>gi|148727351 COBW domain containing 3 [Homo sapiens]
Length = 395
Score = 125 bits (313), Expect = 1e-29
Identities = 61/62 (98%), Positives = 61/62 (98%)
Query: 16 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 75
GAGKTTLLNYILTEQHSKRVAVILNE GEGSALEKSLAVSQGGELYEEWLELRNGCLCCS
Sbjct: 52 GAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 111
Query: 76 VK 77
VK
Sbjct: 112 VK 113
>gi|119120938 COBW domain containing 5 [Homo sapiens]
Length = 347
Score = 125 bits (313), Expect = 1e-29
Identities = 61/62 (98%), Positives = 61/62 (98%)
Query: 16 GAGKTTLLNYILTEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 75
GAGKTTLLNYILTEQHSKRVAVILNE GEGSALEKSLAVSQGGELYEEWLELRNGCLCCS
Sbjct: 52 GAGKTTLLNYILTEQHSKRVAVILNESGEGSALEKSLAVSQGGELYEEWLELRNGCLCCS 111
Query: 76 VK 77
VK
Sbjct: 112 VK 113
>gi|11559925 X-prolyl aminopeptidase (aminopeptidase P) 3, putative
[Homo sapiens]
Length = 507
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 9 AFPVLLTGAGKTTLLNYILTEQHSKRVAVILNEFG-EGSALEKSLA---------VSQGG 58
A+P ++ G ++ L+Y+ Q K ++L + G E S + +
Sbjct: 299 AYPPVVAGGNRSNTLHYVKNNQLIKDGEMVLLDGGCESSCYVSDITRTWPVNGRFTAPQA 358
Query: 59 ELYEEWLELRNGCL 72
ELYE LE++ CL
Sbjct: 359 ELYEAVLEIQRDCL 372
>gi|45580709 unc-93 homolog B1 [Homo sapiens]
Length = 597
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 13 LLTGAGKTTLLNYIL--------TEQHSKRVAVILNEFGEGSALEKSLAVSQGGELYEE 63
L+ GAG LL +IL QHS + V +G GSAL K+ + G LYE+
Sbjct: 405 LVAGAGVHLLLTFILFFWAPVPRVLQHSWILYVAAALWGVGSALNKTGLSTLLGILYED 463
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 51 SLAVSQGGELYEEWLELRNGCLCC 74
S A G EWL LR+GC+ C
Sbjct: 42 SSAAGAGAAGVSEWLVLRDGCMHC 65
>gi|224809576 immunity-related GTPase family, M [Homo sapiens]
Length = 181
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 15 TGAGKTTLLNYILTEQHSKR--VAVILNEFGEGSALEKSLAVSQGGELYEEWLEL 67
TG+ TTL NY++ Q ++ + V +F + A G + Y W +L
Sbjct: 94 TGSATTTLENYLMEMQFNRYDFIMVASAQFSMNHVMLAKTAEDMGKKFYIVWTKL 148
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,713,903
Number of Sequences: 37866
Number of extensions: 85629
Number of successful extensions: 230
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 12
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.