Search of human proteins with 239752782

Search of human proteins with 239752782

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752782 PREDICTED: hypothetical protein [Homo sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752782 PREDICTED: hypothetical protein [Homo sapiens]           174   1e-44
gi|239747284 PREDICTED: hypothetical protein XP_002346422 [Homo ...   174   1e-44
gi|239741108 PREDICTED: hypothetical protein XP_002342130 [Homo ...   174   1e-44
gi|38570105 Ras-interacting protein 1 [Homo sapiens]                   29   0.91 
gi|4504545 5-hydroxytryptamine (serotonin) receptor 6 [Homo sapi...    27   4.5  
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa...    27   4.5  
gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b ...    26   7.7  
gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a ...    26   7.7  
gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c ...    26   7.7  

>gi|239752782 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 86

 Score =  174 bits (441), Expect = 1e-44
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
          MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW
Sbjct: 1  MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60

Query: 61 MARPVMVPVDSGWIRRTACSSAALET 86
          MARPVMVPVDSGWIRRTACSSAALET
Sbjct: 61 MARPVMVPVDSGWIRRTACSSAALET 86


>gi|239747284 PREDICTED: hypothetical protein XP_002346422 [Homo
          sapiens]
          Length = 86

 Score =  174 bits (441), Expect = 1e-44
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
          MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW
Sbjct: 1  MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60

Query: 61 MARPVMVPVDSGWIRRTACSSAALET 86
          MARPVMVPVDSGWIRRTACSSAALET
Sbjct: 61 MARPVMVPVDSGWIRRTACSSAALET 86


>gi|239741108 PREDICTED: hypothetical protein XP_002342130 [Homo
          sapiens]
          Length = 86

 Score =  174 bits (441), Expect = 1e-44
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60
          MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW
Sbjct: 1  MATSRGIMGIKVSAGKAHNSEREPPNSSILAGWRARTLLMSGDLERPPSASPKALVIANW 60

Query: 61 MARPVMVPVDSGWIRRTACSSAALET 86
          MARPVMVPVDSGWIRRTACSSAALET
Sbjct: 61 MARPVMVPVDSGWIRRTACSSAALET 86


>gi|38570105 Ras-interacting protein 1 [Homo sapiens]
          Length = 963

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 13/44 (29%)

Query: 33  WRARTLLMSGDLERPPSASPKALVIANWMARPVMVPVDSGWIRR 76
           WRA  L + GD ERP       LV   W ARP       GW RR
Sbjct: 221 WRAEHLRVLGDSERP------LLVQELWRARP-------GWARR 251


>gi|4504545 5-hydroxytryptamine (serotonin) receptor 6 [Homo
          sapiens]
          Length = 440

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/37 (35%), Positives = 14/37 (37%)

Query: 48 PSASPKALVIANWMARPVMVPVDSGWIRRTACSSAAL 84
          P   P A     W A P   P  SGW+    C   AL
Sbjct: 3  PEPGPTANSTPAWGAGPPSAPGGSGWVAAALCVVIAL 39


>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
           sapiens]
          Length = 2113

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 17  AHNSEREPPNS--SILAGWRARTLLMSGDLERPPSASPKALVIANWMARPVMVPVDSGWI 74
           A  S  +P  S  +IL G+ ++ +     +E P +AS   +    W+     +P DS W 
Sbjct: 274 ARLSVTDPAESIPTILDGFHSQEVWAGHTVELPCTASGYPIPAIRWLKDGRPLPADSRWT 333

Query: 75  RR 76
           +R
Sbjct: 334 KR 335


>gi|90421316 hypoxia inducible factor 3, alpha subunit isoform b
           [Homo sapiens]
          Length = 613

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)

Query: 20  SEREPPNSSILAGWRARTLLMSGDLE---------RPPSASP 52
           S  +P  SS +AG R RTL  S + E         RPP  SP
Sbjct: 499 SRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 540


>gi|23065535 hypoxia inducible factor 3, alpha subunit isoform a
           [Homo sapiens]
          Length = 667

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)

Query: 20  SEREPPNSSILAGWRARTLLMSGDLE---------RPPSASP 52
           S  +P  SS +AG R RTL  S + E         RPP  SP
Sbjct: 553 SRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 594


>gi|90421311 hypoxia inducible factor 3, alpha subunit isoform c
           [Homo sapiens]
          Length = 669

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)

Query: 20  SEREPPNSSILAGWRARTLLMSGDLE---------RPPSASP 52
           S  +P  SS +AG R RTL  S + E         RPP  SP
Sbjct: 555 SRGDPSASSPMAGARKRTLAQSSEDEDEGVELLGVRPPKRSP 596


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.126    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,502,361
Number of Sequences: 37866
Number of extensions: 128100
Number of successful extensions: 297
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.