Guide to the Human Genome
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Name: LOC100291229 Sequence: fasta or formatted (112aa) NCBI GI: 239752501
Description:

PREDICTED: hypothetical protein XP_002347094

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          6           1
 C cysteine            2.7          3           1
 D aspartate           2.7          3           1
 E glutamate           8.0          9           2
 F phenylalanine       3.6          4           1
 G glycine             4.5          5           1
 H histidine           3.6          4           1
 I isoleucine          8.9         10           1
 K lysine              8.9         10           2
 L leucine             9.8         11           2
 M methionine          5.4          6           1
 N asparagine          3.6          4           1
 P proline             0.0          0           0
 Q glutamine           0.9          1           1
 R arginine            5.4          6           1
 S serine              8.9         10           2
 T threonine           8.9         10           1
 V valine              4.5          5           2
 W tryptophan          0.0          0           0
 Y tyrosine            4.5          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347094 
ANXA8                 0.980   annexin A8 
ANXA8L2               0.980   annexin A8L2 
ANXA8L1               0.980   annexin A8-like 1 
ANXA4                 0.561   annexin IV 
ANXA11                0.455   annexin A11 
ANXA11                0.455   annexin A11 
ANXA11                0.455   annexin A11 
ANXA5                 0.429   annexin 5 
ANXA6                 0.404   annexin VI isoform 2 
ANXA6                 0.404   annexin VI isoform 1 
ANXA13                0.394   annexin A13 isoform b 
ANXA13                0.394   annexin A13 isoform a 
ANXA2                 0.389   annexin A2 isoform 2 
ANXA2                 0.389   annexin A2 isoform 2 
ANXA2                 0.389   annexin A2 isoform 1 
ANXA2                 0.389   annexin A2 isoform 2 
ANXA7                 0.389   annexin VII isoform 2 
ANXA7                 0.389   annexin VII isoform 1 
ANXA3                 0.374   annexin A3 
ANXA1                 0.354   annexin I 
ANXA10                0.258   annexin A10 
ANXA9                 0.247   annexin A9 
CLASP1                0.020   CLIP-associating protein 1 isoform 3 
CLASP1                0.020   CLIP-associating protein 1 isoform 2 
CLASP1                0.020   CLIP-associating protein 1 isoform 1 
GAS7                  0.010   growth arrest-specific 7 isoform d 
GAS7                  0.010   growth arrest-specific 7 isoform c 
GAS7                  0.010   growth arrest-specific 7 isoform b 
GAS7                  0.010   growth arrest-specific 7 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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