Guide to the Human Genome
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Name: LOC100288765 Sequence: fasta or formatted (601aa) NCBI GI: 239743841
Description:

PREDICTED: hypothetical protein XP_002342966

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7         16           1
 C cysteine            6.7         40           1
 D aspartate           1.5          9           1
 E glutamate           9.5         57           2
 F phenylalanine       4.7         28           2
 G glycine             6.3         38           2
 H histidine           6.2         37           1
 I isoleucine          5.3         32           2
 K lysine             14.0         84           2
 L leucine             6.0         36           1
 M methionine          1.2          7           1
 N asparagine          4.3         26           2
 P proline             3.0         18           1
 Q glutamine           4.3         26           1
 R arginine            4.3         26           3
 S serine              7.5         45           3
 T threonine           4.5         27           1
 V valine              2.5         15           1
 W tryptophan          1.2          7           1
 Y tyrosine            4.5         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342966 
LOC729501             0.952   PREDICTED: zinc finger protein ENSP00000344568-like...
LOC100133475          0.642   PREDICTED: similar to Putative zinc finger protein ...
ZNF726                0.591   PREDICTED: zinc finger protein 726 
ZNF726                0.591   PREDICTED: zinc finger protein 726 
ZNF726                0.591   PREDICTED: zinc finger protein 726 
ZNF91                 0.583   zinc finger protein 91 
ZNF99                 0.581   zinc finger protein 99 
ZNF429                0.575   zinc finger protein 429 
ZNF85                 0.561   zinc finger protein 85 
ZNF254                0.560   zinc finger protein 254 
ZNF493                0.560   zinc finger protein 493 isoform 3 
ZNF93                 0.559   zinc finger protein 93 
ZNF595                0.559   zinc finger protein 595 
ZNF43                 0.555   zinc finger protein 43 
ZNF737                0.551   PREDICTED: zinc finger protein 737 
ZNF737                0.551   PREDICTED: zinc finger protein 737 
ZNF737                0.551   PREDICTED: zinc finger protein 737 
ZNF676                0.547   zinc finger protein 676 
ZNF66                 0.546   PREDICTED: zinc finger protein 66 
ZNF66                 0.546   PREDICTED: zinc finger protein 66 
ZNF208                0.546   zinc finger protein 208 
ZNF728                0.543   PREDICTED: zinc finger protein 728 
ZNF728                0.542   PREDICTED: zinc finger protein 728 
ZNF728                0.542   PREDICTED: zinc finger protein 728 
ZNF66                 0.535   PREDICTED: zinc finger protein 66 
ZNF681                0.531   zinc finger protein 681 
ZNF708                0.521   zinc finger protein 708 
ZNF107                0.513   zinc finger protein 107 
ZNF107                0.513   zinc finger protein 107 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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