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Search of human proteins with 118572611
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118572611 nucleotide binding protein 1 [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118572611 nucleotide binding protein 1 [Homo sapiens] 654 0.0
gi|6912540 nucleotide binding protein 2 (MinD homolog, E. coli) ... 276 1e-74
gi|157384956 nucleotide binding protein-like [Homo sapiens] 187 8e-48
gi|108773784 ATP-binding cassette, sub-family E, member 1 [Homo ... 33 0.26
gi|108773782 ATP-binding cassette, sub-family E, member 1 [Homo ... 33 0.26
gi|5453593 adenylyl cyclase-associated protein 2 [Homo sapiens] 32 0.75
gi|224465209 phosphoseryl-tRNA kinase [Homo sapiens] 30 2.2
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 30 2.9
gi|23943912 phosphoinositide-3-kinase, regulatory subunit 4 [Hom... 30 2.9
gi|239747580 PREDICTED: similar to NAV1 protein [Homo sapiens] 30 3.7
gi|44680130 tripartite motif-containing 7 isoform 2 [Homo sapiens] 30 3.7
gi|44680128 tripartite motif-containing 7 isoform 3 [Homo sapiens] 30 3.7
gi|44680126 tripartite motif-containing 7 isoform 3 [Homo sapiens] 30 3.7
gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens] 30 3.7
gi|27262622 neuron navigator 1 [Homo sapiens] 30 3.7
gi|44680124 tripartite motif-containing 7 isoform 3 [Homo sapiens] 30 3.7
gi|5454028 related RAS viral (r-ras) oncogene homolog [Homo sapi... 29 6.4
>gi|118572611 nucleotide binding protein 1 [Homo sapiens]
Length = 320
Score = 654 bits (1687), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MEEVPHDCPGADSAQAGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVL 60
MEEVPHDCPGADSAQAGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVL
Sbjct: 1 MEEVPHDCPGADSAQAGRGASCQGCPNQRLCASGAGATPDTAIEEIKEKMKTVKHKILVL 60
Query: 61 SGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPV 120
SGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPV
Sbjct: 61 SGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQSGSGWSPV 120
Query: 121 YVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEH 180
YVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEH
Sbjct: 121 YVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEH 180
Query: 181 LSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKK 240
LSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKK
Sbjct: 181 LSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKK 240
Query: 241 ESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSII 300
ESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSII
Sbjct: 241 ESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSII 300
Query: 301 QRIQEFCNLHQSKEENLISS 320
QRIQEFCNLHQSKEENLISS
Sbjct: 301 QRIQEFCNLHQSKEENLISS 320
>gi|6912540 nucleotide binding protein 2 (MinD homolog, E. coli)
[Homo sapiens]
Length = 271
Score = 276 bits (707), Expect = 1e-74
Identities = 134/253 (52%), Positives = 179/253 (70%), Gaps = 5/253 (1%)
Query: 53 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQ 112
V+H ILVLSGKGGVGKST S LA L ++ +LD+D+CGPSIP+++G +G VHQ
Sbjct: 13 VRHIILVLSGKGGVGKSTISTELALALRH-AGKKVGILDVDLCGPSIPRMLGAQGRAVHQ 71
Query: 113 SGSGWSPVYV--EDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIV 170
GW+PV++ E ++ +MSVGFLL PD+AV+WRGPKKN +IKQF+ DV WGE+DYL+V
Sbjct: 72 CDRGWAPVFLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGELDYLVV 131
Query: 171 DTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENM 230
DTPPGTSDEH++ + L GA+++TTPQ VS+ DVR+E+ FCRK L ++G+VENM
Sbjct: 132 DTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENM 191
Query: 231 SGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDS 290
SGF CP C + + +F + GG E + Q VP LG VPLDP + + ++G F + P S
Sbjct: 192 SGFTCPHCTECTSVF--SRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGS 249
Query: 291 PATLAYRSIIQRI 303
PA A SI Q+I
Sbjct: 250 PAFAALTSIAQKI 262
>gi|157384956 nucleotide binding protein-like [Homo sapiens]
Length = 319
Score = 187 bits (476), Expect = 8e-48
Identities = 119/309 (38%), Positives = 175/309 (56%), Gaps = 32/309 (10%)
Query: 10 GADSAQAGRGASCQ-GCPNQRLCA---SGAGATPDTAIEEIKEK--------------MK 51
G S +AG GA+ G +C SGAG+ E +K++ ++
Sbjct: 11 GGVSLRAGGGATAPLGGSRAMVCGRQLSGAGS------ETLKQRRTQIMSRGLPKQKPIE 64
Query: 52 TVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQ-IALLDIDICGPSIPKIMGLEGEQV 110
VK I+V SGKGGVGKST + +LA LA +++++ I LLD+D+ GPS+PK+M L+G
Sbjct: 65 GVKQVIVVASGKGGVGKSTTAVNLALALAANDSSKAIGLLDVDVYGPSVPKMMNLKGNPE 124
Query: 111 HQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGEVDYLIV 170
+ P+ + + MS+GFL+ + V+WRG I++ LR VDWG++DYL+V
Sbjct: 125 LSQSNLMRPL-LNYGIACMSMGFLVEE-SEPVVWRGLMVMSAIEKLLRQVDWGQLDYLVV 182
Query: 171 DTPPGTSDEHLSVVRYLATAHIDGAVIITTPQEVSLQDVRKEINFCRKVKLPIIGVVENM 230
D PPGT D LSV + + I GAVI++TPQ+++L D K R+V +P++G+V+NM
Sbjct: 183 DMPPGTGDVQLSVSQNIP---ITGAVIVSTPQDIALMDAHKGAEMFRRVHVPVLGLVQNM 239
Query: 231 SGFICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDS 290
S F CPKCK ++ IF GA + Q L + +LG +PL I + D GQ P+S
Sbjct: 240 SVFQCPKCKHKTHIF--GADGARKLAQTLGLEVLGDIPLHLNIREASDTGQPIVFSQPES 297
Query: 291 PATLAYRSI 299
AY I
Sbjct: 298 DEAKAYLRI 306
>gi|108773784 ATP-binding cassette, sub-family E, member 1 [Homo
sapiens]
Length = 599
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 56 KILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSI-PKIMGLEGEQVHQ 112
+I+V+ G+ G GK+TF LA L DE ++ +L++ I PK G + +H+
Sbjct: 373 EIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHE 430
>gi|108773782 ATP-binding cassette, sub-family E, member 1 [Homo
sapiens]
Length = 599
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 56 KILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSI-PKIMGLEGEQVHQ 112
+I+V+ G+ G GK+TF LA L DE ++ +L++ I PK G + +H+
Sbjct: 373 EIMVMLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHE 430
>gi|5453593 adenylyl cyclase-associated protein 2 [Homo sapiens]
Length = 477
Score = 32.0 bits (71), Expect = 0.75
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 211 KEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELM-CQDLEVPLLGRVP 268
K++ + K + I + ++ I CKK +F G E++ QD+++ ++GRVP
Sbjct: 351 KQVAYIFKCEKSTIQIKGKVNSIIIDNCKKLGLVFDNVVGIVEVINSQDIQIQVMGRVP 409
>gi|224465209 phosphoseryl-tRNA kinase [Homo sapiens]
Length = 348
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 54 KHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDICGPSIPKIMGLEGEQVHQS 113
K + VL G GKSTF+ LAH L +++ I ++ D P L G + +
Sbjct: 17 KRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPD----AFLAGARARPA 72
Query: 114 GSGW 117
S W
Sbjct: 73 PSQW 76
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 30.0 bits (66), Expect = 2.9
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 35 AGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDIDI 94
A PD ++ ++ + ++ G G GK+ SA + + LA N + +
Sbjct: 465 AQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVL-----V 519
Query: 95 CGPSIPKIMGLEGEQVHQSG 114
C PS + L E++HQ+G
Sbjct: 520 CAPSNIAVDQLT-EKIHQTG 538
>gi|23943912 phosphoinositide-3-kinase, regulatory subunit 4 [Homo
sapiens]
Length = 1358
Score = 30.0 bits (66), Expect = 2.9
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 16/142 (11%)
Query: 48 EKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLA-EDENTQIALLDIDICG-PSIPKIMGL 105
E T IL S GG K+ +H LA +N + LL I+ P PKI L
Sbjct: 1026 EGKTTTTRSILTYSRIGGRVKTLTFCQGSHYLAIASDNGAVQLLGIEASKLPKSPKIHPL 1085
Query: 106 EGE-----------QVHQSGSGWSPVYVEDNLGVMSVGFLLSSPDDAVIWRGPKKNGMIK 154
+ +H SG V + VG+ L S +A + K+G+I
Sbjct: 1086 QSRILDQKEDGCVVDMHHFNSGAQSVLAYATVNGSLVGWDLRSSSNAWTLKHDLKSGLIT 1145
Query: 155 QFLRDVDWGEVDYLIVDTPPGT 176
F D+ +L + T GT
Sbjct: 1146 SFAVDI---HQCWLCIGTSSGT 1164
>gi|239747580 PREDICTED: similar to NAV1 protein [Homo sapiens]
Length = 559
Score = 29.6 bits (65), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 53 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQI 87
+KH+ LVLSG G GK+ + LA L E ++
Sbjct: 231 LKHRRLVLSGPSGTGKTYLTNRLAEYLVERSGREV 265
>gi|44680130 tripartite motif-containing 7 isoform 2 [Homo sapiens]
Length = 329
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 31 CASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALL 90
C++ G P T E+K K+ V K VL G F L L ++E ++ L
Sbjct: 110 CSNVPGPKPTTVSSEMKNKVWNVSLKTFVLKGM----LKKFKEDLRGELEKEEKVELT-L 164
Query: 91 DIDICGPSIPKIMGLEG 107
D D P + + L+G
Sbjct: 165 DPDTANPRLILSLDLKG 181
>gi|44680128 tripartite motif-containing 7 isoform 3 [Homo sapiens]
Length = 303
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 31 CASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALL 90
C++ G P T E+K K+ V K VL G F L L ++E ++ L
Sbjct: 84 CSNVPGPKPTTVSSEMKNKVWNVSLKTFVLKGM----LKKFKEDLRGELEKEEKVELT-L 138
Query: 91 DIDICGPSIPKIMGLEG 107
D D P + + L+G
Sbjct: 139 DPDTANPRLILSLDLKG 155
>gi|44680126 tripartite motif-containing 7 isoform 3 [Homo sapiens]
Length = 303
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 31 CASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALL 90
C++ G P T E+K K+ V K VL G F L L ++E ++ L
Sbjct: 84 CSNVPGPKPTTVSSEMKNKVWNVSLKTFVLKGM----LKKFKEDLRGELEKEEKVELT-L 138
Query: 91 DIDICGPSIPKIMGLEG 107
D D P + + L+G
Sbjct: 139 DPDTANPRLILSLDLKG 155
>gi|44680122 tripartite motif-containing 7 isoform 1 [Homo sapiens]
Length = 511
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 31 CASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALL 90
C++ G P T E+K K+ V K VL G F L L ++E ++ L
Sbjct: 292 CSNVPGPKPTTVSSEMKNKVWNVSLKTFVLKGM----LKKFKEDLRGELEKEEKVELT-L 346
Query: 91 DIDICGPSIPKIMGLEG 107
D D P + + L+G
Sbjct: 347 DPDTANPRLILSLDLKG 363
>gi|27262622 neuron navigator 1 [Homo sapiens]
Length = 1874
Score = 29.6 bits (65), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 53 VKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQI 87
+KH+ LVLSG G GK+ + LA L E ++
Sbjct: 1546 LKHRRLVLSGPSGTGKTYLTNRLAEYLVERSGREV 1580
>gi|44680124 tripartite motif-containing 7 isoform 3 [Homo sapiens]
Length = 303
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 31 CASGAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALL 90
C++ G P T E+K K+ V K VL G F L L ++E ++ L
Sbjct: 84 CSNVPGPKPTTVSSEMKNKVWNVSLKTFVLKGM----LKKFKEDLRGELEKEEKVELT-L 138
Query: 91 DIDICGPSIPKIMGLEG 107
D D P + + L+G
Sbjct: 139 DPDTANPRLILSLDLKG 155
>gi|5454028 related RAS viral (r-ras) oncogene homolog [Homo
sapiens]
Length = 218
Score = 28.9 bits (63), Expect = 6.4
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 15/96 (15%)
Query: 55 HKILVLSGKGGVGKSTFSAHLAHG--------LAEDENTQIALLD-----IDICGPSIPK 101
HK++V+ G GGVGKS + ED T+I +D +DI + +
Sbjct: 30 HKLVVVGG-GGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 88
Query: 102 IMGLEGEQVHQSGSGWSPVY-VEDNLGVMSVGFLLS 136
G EQ ++G G+ V+ + D VG L +
Sbjct: 89 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFT 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,123,870
Number of Sequences: 37866
Number of extensions: 668302
Number of successful extensions: 1702
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 19
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.