Guide to the Human Genome
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Name: NUBP1 Sequence: fasta or formatted (320aa) NCBI GI: 118572611
Description:

nucleotide binding protein 1

Referenced in:

Iron, Copper, and Arsenic Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         20           1
 C cysteine            3.4         11           1
 D aspartate           6.6         21           2
 E glutamate           6.6         21           2
 F phenylalanine       2.8          9           2
 G glycine             9.4         30           2
 H histidine           2.5          8           1
 I isoleucine          7.8         25           2
 K lysine              6.2         20           2
 L leucine             8.1         26           2
 M methionine          2.2          7           1
 N asparagine          2.8          9           1
 P proline             6.6         21           2
 Q glutamine           4.7         15           1
 R arginine            3.1         10           1
 S serine              7.5         24           2
 T threonine           4.1         13           2
 V valine              7.2         23           2
 W tryptophan          0.9          3           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nucleotide binding protein 1 
NUBP2                 0.399   nucleotide binding protein 2 (MinD homolog, E. coli) ...
NUBPL                 0.258   nucleotide binding protein-like 
ABCE1                 0.013   ATP-binding cassette, sub-family E, member 1 
ABCE1                 0.013   ATP-binding cassette, sub-family E, member 1 
CAP2                  0.011   adenylyl cyclase-associated protein 2 
PSTK                  0.008   phosphoseryl-tRNA kinase 
UPF1                  0.008   regulator of nonsense transcripts 1 
PIK3R4                0.008   phosphoinositide-3-kinase, regulatory subunit 4 [Hom...
LOC730426             0.008   PREDICTED: similar to NAV1 protein 
TRIM7                 0.008   tripartite motif-containing 7 isoform 2 
TRIM7                 0.008   tripartite motif-containing 7 isoform 3 
TRIM7                 0.008   tripartite motif-containing 7 isoform 3 
TRIM7                 0.008   tripartite motif-containing 7 isoform 1 
NAV1                  0.008   neuron navigator 1 
TRIM7                 0.008   tripartite motif-containing 7 isoform 3 
RRAS                  0.006   related RAS viral (r-ras) oncogene homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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