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Search of human proteins with 239751260
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo
sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo ... 338 2e-93
gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens] 258 2e-69
gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo ... 258 2e-69
gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo sa... 161 3e-40
gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo ... 161 3e-40
gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo ... 161 3e-40
gi|223890243 ribosomal protein L10 [Homo sapiens] 96 2e-20
gi|18152783 ribosomal protein L10-like protein [Homo sapiens] 94 6e-20
gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens] 88 5e-18
gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens] 88 5e-18
gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo sap... 88 5e-18
gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens] 84 5e-17
gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens] 84 5e-17
gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo sap... 84 5e-17
gi|112382239 desmuslin isoform B [Homo sapiens] 29 1.9
gi|112382237 desmuslin isoform A [Homo sapiens] 29 1.9
gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens] 29 2.5
gi|169164474 PREDICTED: hypothetical protein [Homo sapiens] 28 4.3
gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo sap... 28 4.3
gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo sap... 28 4.3
gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens] 28 5.6
>gi|239751260 PREDICTED: hypothetical protein XP_002347772 [Homo
sapiens]
Length = 180
Score = 338 bits (866), Expect = 2e-93
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MWAALGRXXXXXXXXXXXXXXXXKMPPPTDAYDEESWGGERVGPPSNGAAGIKDARAEHE 60
MWAALGR KMPPPTDAYDEESWGGERVGPPSNGAAGIKDARAEHE
Sbjct: 1 MWAALGRXXXXXXXXXXXXXXXXKMPPPTDAYDEESWGGERVGPPSNGAAGIKDARAEHE 60
Query: 61 EREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQTDSL 120
EREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQTDSL
Sbjct: 61 EREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQTDSL 120
Query: 121 GKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 180
GKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD
Sbjct: 121 GKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 180
>gi|239756779 PREDICTED: similar to hCG1643102 [Homo sapiens]
Length = 186
Score = 258 bits (659), Expect = 2e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 57 AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ 116
AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ
Sbjct: 63 AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ 122
Query: 117 TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK 176
TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK
Sbjct: 123 TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK 182
Query: 177 FKVD 180
FKVD
Sbjct: 183 FKVD 186
>gi|239745753 PREDICTED: hypothetical protein XP_002343545 [Homo
sapiens]
Length = 186
Score = 258 bits (659), Expect = 2e-69
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 57 AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ 116
AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ
Sbjct: 63 AEHEEREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQ 122
Query: 117 TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK 176
TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK
Sbjct: 123 TDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTK 182
Query: 177 FKVD 180
FKVD
Sbjct: 183 FKVD 186
>gi|239754860 PREDICTED: similar to ribosomal protein 10 [Homo
sapiens]
Length = 281
Score = 161 bits (407), Expect = 3e-40
Identities = 88/123 (71%), Positives = 95/123 (77%), Gaps = 4/123 (3%)
Query: 61 EREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQT--- 117
E+E +CAMAANSSFL V LFL WVALR LGDRPFKC FMSLTLHYP+CRL+T
Sbjct: 159 EQEKQAGFCAMAANSSFLGGVHGLFLVWVALRVLGDRPFKCTFMSLTLHYPRCRLETGIQ 218
Query: 118 DSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKF 177
+ GKPQGTVARVHIGQV S+ TKLQNK+ VIE CRAKFK G QKI ISKKW FTKF
Sbjct: 219 GAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISKKWGFTKF 277
Query: 178 KVD 180
VD
Sbjct: 278 NVD 280
>gi|239749401 PREDICTED: hypothetical protein XP_002347030 [Homo
sapiens]
Length = 158
Score = 161 bits (407), Expect = 3e-40
Identities = 88/123 (71%), Positives = 95/123 (77%), Gaps = 4/123 (3%)
Query: 61 EREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQT--- 117
E+E +CAMAANSSFL V LFL WVALR LGDRPFKC FMSLTLHYP+CRL+T
Sbjct: 36 EQEKQAGFCAMAANSSFLGGVHGLFLVWVALRVLGDRPFKCTFMSLTLHYPRCRLETGIQ 95
Query: 118 DSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKF 177
+ GKPQGTVARVHIGQV S+ TKLQNK+ VIE CRAKFK G QKI ISKKW FTKF
Sbjct: 96 GAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISKKWGFTKF 154
Query: 178 KVD 180
VD
Sbjct: 155 NVD 157
>gi|239743536 PREDICTED: hypothetical protein XP_002342871 [Homo
sapiens]
Length = 158
Score = 161 bits (407), Expect = 3e-40
Identities = 88/123 (71%), Positives = 95/123 (77%), Gaps = 4/123 (3%)
Query: 61 EREVGRTWCAMAANSSFLVRVRRLFLGWVALRDLGDRPFKCMFMSLTLHYPQCRLQT--- 117
E+E +CAMAANSSFL V LFL WVALR LGDRPFKC FMSLTLHYP+CRL+T
Sbjct: 36 EQEKQAGFCAMAANSSFLGGVHGLFLVWVALRVLGDRPFKCTFMSLTLHYPRCRLETGIQ 95
Query: 118 DSLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKF 177
+ GKPQGTVARVHIGQV S+ TKLQNK+ VIE CRAKFK G QKI ISKKW FTKF
Sbjct: 96 GAFGKPQGTVARVHIGQV-KSICTKLQNKEHVIEAPCRAKFKFPGHQKIHISKKWGFTKF 154
Query: 178 KVD 180
VD
Sbjct: 155 NVD 157
>gi|223890243 ribosomal protein L10 [Homo sapiens]
Length = 214
Score = 95.5 bits (236), Expect = 2e-20
Identities = 52/70 (74%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 114 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 170
RLQT + GKPQGTVARVHIGQVIMS+RTKLQNK+ VIE L RAKFK G QKI ISK
Sbjct: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISK 169
Query: 171 KWCFTKFKVD 180
KW FTKF D
Sbjct: 170 KWGFTKFNAD 179
>gi|18152783 ribosomal protein L10-like protein [Homo sapiens]
Length = 214
Score = 94.0 bits (232), Expect = 6e-20
Identities = 51/70 (72%), Positives = 55/70 (78%), Gaps = 3/70 (4%)
Query: 114 RLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISK 170
RLQT + GKPQGTVARVHIGQVIMS+RTKLQN++ VIE L RAKFK G QKI ISK
Sbjct: 110 RLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISK 169
Query: 171 KWCFTKFKVD 180
KW FTKF D
Sbjct: 170 KWGFTKFNAD 179
>gi|169162466 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 87.8 bits (216), Expect = 5e-18
Identities = 47/71 (66%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 113 CRLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 169
CRLQT + GKPQGTVARVHIGQVIM + TKLQNK+ VI L R FK G QK+ IS
Sbjct: 45 CRLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHIS 104
Query: 170 KKWCFTKFKVD 180
KKW FTKF D
Sbjct: 105 KKWGFTKFNAD 115
>gi|169162197 PREDICTED: similar to hCG1644589 [Homo sapiens]
Length = 150
Score = 87.8 bits (216), Expect = 5e-18
Identities = 47/71 (66%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 113 CRLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 169
CRLQT + GKPQGTVARVHIGQVIM + TKLQNK+ VI L R FK G QK+ IS
Sbjct: 45 CRLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHIS 104
Query: 170 KKWCFTKFKVD 180
KKW FTKF D
Sbjct: 105 KKWGFTKFNAD 115
>gi|169161235 PREDICTED: hypothetical protein LOC390998 [Homo
sapiens]
Length = 150
Score = 87.8 bits (216), Expect = 5e-18
Identities = 47/71 (66%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 113 CRLQTD---SLGKPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRIS 169
CRLQT + GKPQGTVARVHIGQVIM + TKLQNK+ VI L R FK G QK+ IS
Sbjct: 45 CRLQTGMQVAFGKPQGTVARVHIGQVIMFIHTKLQNKEHVIGALHRVTFKFPGHQKVHIS 104
Query: 170 KKWCFTKFKVD 180
KKW FTKF D
Sbjct: 105 KKWGFTKFNAD 115
>gi|169173188 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 84.3 bits (207), Expect = 5e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 122 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 180
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
>gi|239749350 PREDICTED: similar to hCG1644362 [Homo sapiens]
Length = 226
Score = 84.3 bits (207), Expect = 5e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 122 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 180
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
>gi|239743486 PREDICTED: hypothetical protein LOC645960 [Homo
sapiens]
Length = 226
Score = 84.3 bits (207), Expect = 5e-17
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 122 KPQGTVARVHIGQVIMSMRTKLQNKQLVIEDLCRAKFKLLGCQKIRISKKWCFTKFKVD 180
KPQG VARVHIGQVIMS+ TKLQNK+ VIE LC+A FK G Q I S+KW FTKF VD
Sbjct: 34 KPQGAVARVHIGQVIMSICTKLQNKEHVIEALCKANFKFPGRQNIHFSEKWDFTKFSVD 92
>gi|112382239 desmuslin isoform B [Homo sapiens]
Length = 1253
Score = 29.3 bits (64), Expect = 1.9
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Query: 30 DAYDEESWGGERVGPPSNGAAGIKDARAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWV 89
DA E +R+ A G DA ++RE+ A AA + L R++ G
Sbjct: 86 DALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLD 145
Query: 90 ALRDLGDRPFKCMFMSLTLHYPQCRLQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLV 149
A + R + SLT+H+ R + P + VH ++ + + QL
Sbjct: 146 AAHERDVRELRARAASLTMHF---RARATGPAAPPPRLREVHDSYALLVAESWRETVQLY 202
Query: 150 IEDLCRAKFKLLGCQKIRI 168
+++ + L Q+ R+
Sbjct: 203 EDEVRELEEALRRGQESRL 221
>gi|112382237 desmuslin isoform A [Homo sapiens]
Length = 1565
Score = 29.3 bits (64), Expect = 1.9
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 3/139 (2%)
Query: 30 DAYDEESWGGERVGPPSNGAAGIKDARAEHEEREVGRTWCAMAANSSFLVRVRRLFLGWV 89
DA E +R+ A G DA ++RE+ A AA + L R++ G
Sbjct: 86 DALRRELRELQRLDAEERAARGRLDAELGAQQRELQEALGARAALEALLGRLQAERRGLD 145
Query: 90 ALRDLGDRPFKCMFMSLTLHYPQCRLQTDSLGKPQGTVARVHIGQVIMSMRTKLQNKQLV 149
A + R + SLT+H+ R + P + VH ++ + + QL
Sbjct: 146 AAHERDVRELRARAASLTMHF---RARATGPAAPPPRLREVHDSYALLVAESWRETVQLY 202
Query: 150 IEDLCRAKFKLLGCQKIRI 168
+++ + L Q+ R+
Sbjct: 203 EDEVRELEEALRRGQESRL 221
>gi|194353966 dynein, axonemal, heavy polypeptide 6 [Homo sapiens]
Length = 4158
Score = 28.9 bits (63), Expect = 2.5
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 44 PPSNGAAGIKDARAE-----HEEREVGRTWCAMAANSSF---LVRVRRLF--LGWVALRD 93
PP A I+ A E EE +G+ W + F +++ R+ F LGW +
Sbjct: 3656 PPKGLRANIRRAFTEMTPSFFEENILGKKWRQIIFGICFFHAIIQERKKFGPLGWNICYE 3715
Query: 94 LGDRPFKCMFMSLTLHYPQCRLQTDSL 120
D +C ++L L+ + ++ D+L
Sbjct: 3716 FNDSDRECALLNLKLYCKEGKIPWDAL 3742
>gi|169164474 PREDICTED: hypothetical protein [Homo sapiens]
Length = 259
Score = 28.1 bits (61), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 37 WGGERVGPPSNGAAGIKDARA 57
WGG R G P GA G + ARA
Sbjct: 70 WGGARSGRPGGGAGGRRCARA 90
>gi|239747958 PREDICTED: hypothetical protein isoform 4 [Homo
sapiens]
Length = 259
Score = 28.1 bits (61), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 37 WGGERVGPPSNGAAGIKDARA 57
WGG R G P GA G + ARA
Sbjct: 70 WGGARSGRPGGGAGGRRCARA 90
>gi|239741853 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 259
Score = 28.1 bits (61), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 37 WGGERVGPPSNGAAGIKDARA 57
WGG R G P GA G + ARA
Sbjct: 70 WGGARSGRPGGGAGGRRCARA 90
>gi|239751012 PREDICTED: similar to hCG2041351 [Homo sapiens]
Length = 186
Score = 27.7 bits (60), Expect = 5.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 35 ESWGGERVGPPSNGAAGIKDARAEHEEREVGRT 67
E +GPP G +D E E+R+VGR+
Sbjct: 141 EKCKSSELGPPCQERLGAEDGEMEMEKRQVGRS 173
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,595,353
Number of Sequences: 37866
Number of extensions: 262939
Number of successful extensions: 881
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 22
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.