Search of human proteins with 239750779

Search of human proteins with 239750779

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750779 PREDICTED: similar to hCG2006901 [Homo sapiens]
         (69 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750779 PREDICTED: similar to hCG2006901 [Homo sapiens]          139   5e-34
gi|239756239 PREDICTED: similar to hCG2006901 [Homo sapiens]          120   2e-28
gi|126032348 hect domain and RLD 2 [Homo sapiens]                     117   3e-27
gi|239745529 PREDICTED: hypothetical protein XP_002343479 [Homo ...    93   4e-20
gi|118402590 myosin XV [Homo sapiens]                                  29   0.70 
gi|31791053 zinc finger protein 804B [Homo sapiens]                    27   4.5  
gi|166851804 tudor domain containing 9 [Homo sapiens]                  26   5.9  

>gi|239750779 PREDICTED: similar to hCG2006901 [Homo sapiens]
          Length = 69

 Score =  139 bits (350), Expect = 5e-34
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 1  MLSQMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMH 60
          MLSQMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMH
Sbjct: 1  MLSQMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMH 60

Query: 61 VSVMMELCV 69
          VSVMMELCV
Sbjct: 61 VSVMMELCV 69


>gi|239756239 PREDICTED: similar to hCG2006901 [Homo sapiens]
          Length = 262

 Score =  120 bits (302), Expect = 2e-28
 Identities = 58/66 (87%), Positives = 62/66 (93%)

Query: 4   QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHVSV 63
           QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMH   
Sbjct: 52  QMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHCFS 111

Query: 64  MMELCV 69
           ++ +C+
Sbjct: 112 LVSVCL 117


>gi|126032348 hect domain and RLD 2 [Homo sapiens]
          Length = 4834

 Score =  117 bits (292), Expect = 3e-27
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 2   LSQMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHV 61
           LSQMLSAILLLLQLW SGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMH+
Sbjct: 303 LSQMLSAILLLLQLWDSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHL 362


>gi|239745529 PREDICTED: hypothetical protein XP_002343479 [Homo
           sapiens]
          Length = 138

 Score = 93.2 bits (230), Expect = 4e-20
 Identities = 49/60 (81%), Positives = 51/60 (85%)

Query: 2   LSQMLSAILLLLQLWYSGAQETDNERSAQGTSAPLLPLLQRFQSIICRKDAPHSEGDMHV 61
           LSQMLSAILLLLQLW S AQETDNERSAQGTS  LL LLQ FQSIIC KD P SEG+MH+
Sbjct: 42  LSQMLSAILLLLQLWDSRAQETDNERSAQGTSTLLLSLLQTFQSIICGKDTPPSEGNMHL 101


>gi|118402590 myosin XV [Homo sapiens]
          Length = 3530

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 10   LLLLQLWYSGAQETDNERSAQ-GTSAPLLPLLQRFQSIICRKDAPHSEGDMHVSVMMELC 68
            +++ QL YSG  ET   R        P    + R+  ++  K    + GDM VSV+  LC
Sbjct: 1811 VVMAQLRYSGVLETVRIRKEGFPVRLPFQGFIDRYCCLVALKHDLPANGDMCVSVLSRLC 1870


>gi|31791053 zinc finger protein 804B [Homo sapiens]
          Length = 1349

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 9   ILLLLQLWYSGAQETDNERSAQGTSAPLLP--LLQRFQSIICRKDAPHSE 56
           I  LL+   SG  ET    +A+G   PL    LL+R Q+  C++ + + E
Sbjct: 896 ISCLLKNCSSGPSETTESNTAEGERTPLTAKILLERVQAKKCQEQSSNVE 945


>gi|166851804 tudor domain containing 9 [Homo sapiens]
          Length = 1382

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 2   LSQMLSAILLLLQLWYSGAQETDNERSAQGTSAP-LLPLLQRFQSIICRKDAPHSEGDMH 60
           LSQ  S +  + +     AQE D  RS Q TS P   P L +  S+ C     +   D+ 
Sbjct: 74  LSQRSSEVEYINKYRQLEAQELDVCRSVQPTSGPGPRPSLAKLSSVTCIPGTTYKYPDLP 133

Query: 61  VS 62
           +S
Sbjct: 134 IS 135


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,323,958
Number of Sequences: 37866
Number of extensions: 71536
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 7
length of query: 69
length of database: 18,247,518
effective HSP length: 42
effective length of query: 27
effective length of database: 16,657,146
effective search space: 449742942
effective search space used: 449742942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.