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Search of human proteins with 239750004
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750004 PREDICTED: hypothetical protein XP_002347251 [Homo
sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750004 PREDICTED: hypothetical protein XP_002347251 [Homo ... 357 2e-99
gi|239744315 PREDICTED: hypothetical protein XP_002343116 [Homo ... 357 2e-99
gi|23308733 zinc finger protein 337 [Homo sapiens] 33 0.13
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 30 1.4
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens] 29 1.9
gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo ... 29 1.9
gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo ... 29 1.9
gi|239755661 PREDICTED: hypothetical protein [Homo sapiens] 29 2.4
gi|169160919 PREDICTED: hypothetical protein [Homo sapiens] 29 2.4
gi|239750175 PREDICTED: hypothetical protein XP_002347304 [Homo ... 29 2.4
gi|169162159 PREDICTED: hypothetical protein [Homo sapiens] 29 2.4
gi|239744486 PREDICTED: hypothetical protein XP_002343172 [Homo ... 29 2.4
gi|169161152 PREDICTED: hypothetical protein [Homo sapiens] 29 2.4
gi|14149987 WD repeat domain 24 [Homo sapiens] 29 2.4
gi|29788760 diacylglycerol kinase, eta isoform 1 [Homo sapiens] 27 9.3
gi|29788751 diacylglycerol kinase, eta isoform 2 [Homo sapiens] 27 9.3
gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens] 27 9.3
>gi|239750004 PREDICTED: hypothetical protein XP_002347251 [Homo
sapiens]
Length = 177
Score = 357 bits (917), Expect = 2e-99
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60
MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV
Sbjct: 1 MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60
Query: 61 PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120
PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL
Sbjct: 61 PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120
Query: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177
GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG
Sbjct: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177
>gi|239744315 PREDICTED: hypothetical protein XP_002343116 [Homo
sapiens]
Length = 177
Score = 357 bits (917), Expect = 2e-99
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60
MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV
Sbjct: 1 MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60
Query: 61 PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120
PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL
Sbjct: 61 PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120
Query: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177
GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG
Sbjct: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177
>gi|23308733 zinc finger protein 337 [Homo sapiens]
Length = 751
Score = 33.1 bits (74), Expect = 0.13
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 120 LGVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQ 176
LG+L ++ L+ LE V G + R GP ++A L P+N HQRQQQ Q
Sbjct: 51 LGILHSKPELIRRLEQGEVPWGEERRRRPGPCAGIYAEHVLRPKNLGLAHQRQQQLQ 107
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 29.6 bits (65), Expect = 1.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 156 AHRGLGPQNPRRQHQRQQQPQ 176
A +GPQ P +Q Q+QQQPQ
Sbjct: 3186 ATMAMGPQQPPQQQQQQQQPQ 3206
>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
Length = 195
Score = 29.3 bits (64), Expect = 1.9
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 111 LVRGELVEGLGVLLAQEGLVVVLEALVVLRGPL-AQLRVGPHHALF------AHRGLGPQ 163
++ GEL+E LG A + + L G + A+L VG H AH P
Sbjct: 54 VIGGELLEALGA--ASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPA 111
Query: 164 NP-RRQHQRQQQPQ 176
P RR HQ+QQQ Q
Sbjct: 112 APCRRHHQQQQQDQ 125
>gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo
sapiens]
Length = 153
Score = 29.3 bits (64), Expect = 1.9
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 111 LVRGELVEGLGVLLAQEGLVVVLEALVVLRGPL-AQLRVGPHHALF------AHRGLGPQ 163
++ GEL+E LG A + + L G + A+L VG H AH P
Sbjct: 54 VIGGELLEALGA--ASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPA 111
Query: 164 NP-RRQHQRQQQPQ 176
P RR HQ+QQQ Q
Sbjct: 112 APCRRHHQQQQQDQ 125
>gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo
sapiens]
Length = 153
Score = 29.3 bits (64), Expect = 1.9
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 111 LVRGELVEGLGVLLAQEGLVVVLEALVVLRGPL-AQLRVGPHHALF------AHRGLGPQ 163
++ GEL+E LG A + + L G + A+L VG H AH P
Sbjct: 54 VIGGELLEALGA--ASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPA 111
Query: 164 NP-RRQHQRQQQPQ 176
P RR HQ+QQQ Q
Sbjct: 112 APCRRHHQQQQQDQ 125
>gi|239755661 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 2.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 116 LVEGLGVLLAQEGLVVVLEALVVLRGPLAQL 146
++ GLGV+L Q G V+LE+L LAQL
Sbjct: 1 MLGGLGVVLGQSGAAVLLESLKARGQALAQL 31
>gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 28.9 bits (63), Expect = 2.4
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 86 QLLSSDKAIPIIVDSINNLPAPLLALV---RGELVEGLGVLLAQEGLVVVLEALVVLRGP 142
Q+ + DKA+ + D+ L A + ALV RGE+ E L L EGL+ + A VV
Sbjct: 175 QVGALDKALAAL-DARVGLLARVRALVLRERGEVAEALLALATAEGLLAGVHAQVV---- 229
Query: 143 LAQLRVGPH--HALFAHRG 159
Q+RV P AL AH G
Sbjct: 230 -HQVRVTPEALPALAAHVG 247
>gi|239750175 PREDICTED: hypothetical protein XP_002347304 [Homo
sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 2.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 116 LVEGLGVLLAQEGLVVVLEALVVLRGPLAQL 146
++ GLGV+L Q G V+LE+L LAQL
Sbjct: 1 MLGGLGVVLGQSGAAVLLESLKARGQALAQL 31
>gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 28.9 bits (63), Expect = 2.4
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 86 QLLSSDKAIPIIVDSINNLPAPLLALV---RGELVEGLGVLLAQEGLVVVLEALVVLRGP 142
Q+ + DKA+ + D+ L A + ALV RGE+ E L L EGL+ + A VV
Sbjct: 175 QVGALDKALAAL-DARVGLLARVRALVLRERGEVAEALLALATAEGLLAGVHAQVV---- 229
Query: 143 LAQLRVGPH--HALFAHRG 159
Q+RV P AL AH G
Sbjct: 230 -HQVRVTPEALPALAAHVG 247
>gi|239744486 PREDICTED: hypothetical protein XP_002343172 [Homo
sapiens]
Length = 155
Score = 28.9 bits (63), Expect = 2.4
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 116 LVEGLGVLLAQEGLVVVLEALVVLRGPLAQL 146
++ GLGV+L Q G V+LE+L LAQL
Sbjct: 1 MLGGLGVVLGQSGAAVLLESLKARGQALAQL 31
>gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 28.9 bits (63), Expect = 2.4
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 86 QLLSSDKAIPIIVDSINNLPAPLLALV---RGELVEGLGVLLAQEGLVVVLEALVVLRGP 142
Q+ + DKA+ + D+ L A + ALV RGE+ E L L EGL+ + A VV
Sbjct: 175 QVGALDKALAAL-DARVGLLARVRALVLRERGEVAEALLALATAEGLLAGVHAQVV---- 229
Query: 143 LAQLRVGPH--HALFAHRG 159
Q+RV P AL AH G
Sbjct: 230 -HQVRVTPEALPALAAHVG 247
>gi|14149987 WD repeat domain 24 [Homo sapiens]
Length = 790
Score = 28.9 bits (63), Expect = 2.4
Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 60 VPIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEG 119
VP + + D+ +++ HP DP F LLS K + + P V EG
Sbjct: 288 VPAAMFEEHRDVTTGIAWRHPHDPSF-LLSGSKDSSLCQHLFRDASQP----VERANPEG 342
Query: 120 LGVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNP 165
L L + E+LV H +F R L P P
Sbjct: 343 LCYGLFGDLAFAAKESLVAAESGRKPYTGDRRHPIFFKRKLDPAEP 388
>gi|29788760 diacylglycerol kinase, eta isoform 1 [Homo sapiens]
Length = 1164
Score = 26.9 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1 MAMCSKKSENSIVLICPAFTAECLI 25
M +CS+ +E I IC A T CL+
Sbjct: 992 MQLCSQAAEELITRICDAATIHCLL 1016
>gi|29788751 diacylglycerol kinase, eta isoform 2 [Homo sapiens]
Length = 1220
Score = 26.9 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1 MAMCSKKSENSIVLICPAFTAECLI 25
M +CS+ +E I IC A T CL+
Sbjct: 992 MQLCSQAAEELITRICDAATIHCLL 1016
>gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens]
Length = 431
Score = 26.9 bits (58), Expect = 9.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 139 LRGPLAQLRVGPHHALFAHRGL 160
LR P A R G H A+FAH L
Sbjct: 184 LRAPEAYYRAGEHFAMFAHNTL 205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.144 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,949,565
Number of Sequences: 37866
Number of extensions: 297595
Number of successful extensions: 902
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 21
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.