Guide to the Human Genome
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Search of human proteins with 239750004

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750004 PREDICTED: hypothetical protein XP_002347251 [Homo
sapiens]
         (177 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750004 PREDICTED: hypothetical protein XP_002347251 [Homo ...   357   2e-99
gi|239744315 PREDICTED: hypothetical protein XP_002343116 [Homo ...   357   2e-99
gi|23308733 zinc finger protein 337 [Homo sapiens]                     33   0.13 
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          30   1.4  
gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]           29   1.9  
gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo ...    29   1.9  
gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo ...    29   1.9  
gi|239755661 PREDICTED: hypothetical protein [Homo sapiens]            29   2.4  
gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]            29   2.4  
gi|239750175 PREDICTED: hypothetical protein XP_002347304 [Homo ...    29   2.4  
gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]            29   2.4  
gi|239744486 PREDICTED: hypothetical protein XP_002343172 [Homo ...    29   2.4  
gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]            29   2.4  
gi|14149987 WD repeat domain 24 [Homo sapiens]                         29   2.4  
gi|29788760 diacylglycerol kinase, eta isoform 1 [Homo sapiens]        27   9.3  
gi|29788751 diacylglycerol kinase, eta isoform 2 [Homo sapiens]        27   9.3  
gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens]            27   9.3  

>gi|239750004 PREDICTED: hypothetical protein XP_002347251 [Homo
           sapiens]
          Length = 177

 Score =  357 bits (917), Expect = 2e-99
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60
           MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV
Sbjct: 1   MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60

Query: 61  PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120
           PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL
Sbjct: 61  PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120

Query: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177
           GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG
Sbjct: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177


>gi|239744315 PREDICTED: hypothetical protein XP_002343116 [Homo
           sapiens]
          Length = 177

 Score =  357 bits (917), Expect = 2e-99
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60
           MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV
Sbjct: 1   MAMCSKKSENSIVLICPAFTAECLIWNIQRLFGTQNILSQRRAWLSRSPRFWPRNFIILV 60

Query: 61  PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120
           PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL
Sbjct: 61  PIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEGL 120

Query: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177
           GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG
Sbjct: 121 GVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQG 177


>gi|23308733 zinc finger protein 337 [Homo sapiens]
          Length = 751

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 120 LGVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNPRRQHQRQQQPQ 176
           LG+L ++  L+  LE   V  G   + R GP   ++A   L P+N    HQRQQQ Q
Sbjct: 51  LGILHSKPELIRRLEQGEVPWGEERRRRPGPCAGIYAEHVLRPKNLGLAHQRQQQLQ 107


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 156  AHRGLGPQNPRRQHQRQQQPQ 176
            A   +GPQ P +Q Q+QQQPQ
Sbjct: 3186 ATMAMGPQQPPQQQQQQQQPQ 3206


>gi|239753418 PREDICTED: similar to hCG2012845 [Homo sapiens]
          Length = 195

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 111 LVRGELVEGLGVLLAQEGLVVVLEALVVLRGPL-AQLRVGPHHALF------AHRGLGPQ 163
           ++ GEL+E LG   A +   +       L G + A+L VG  H         AH    P 
Sbjct: 54  VIGGELLEALGA--ASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPA 111

Query: 164 NP-RRQHQRQQQPQ 176
            P RR HQ+QQQ Q
Sbjct: 112 APCRRHHQQQQQDQ 125


>gi|239747978 PREDICTED: hypothetical protein XP_002346487 [Homo
           sapiens]
          Length = 153

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 111 LVRGELVEGLGVLLAQEGLVVVLEALVVLRGPL-AQLRVGPHHALF------AHRGLGPQ 163
           ++ GEL+E LG   A +   +       L G + A+L VG  H         AH    P 
Sbjct: 54  VIGGELLEALGA--ASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPA 111

Query: 164 NP-RRQHQRQQQPQ 176
            P RR HQ+QQQ Q
Sbjct: 112 APCRRHHQQQQQDQ 125


>gi|239741878 PREDICTED: hypothetical protein XP_002342331 [Homo
           sapiens]
          Length = 153

 Score = 29.3 bits (64), Expect = 1.9
 Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 111 LVRGELVEGLGVLLAQEGLVVVLEALVVLRGPL-AQLRVGPHHALF------AHRGLGPQ 163
           ++ GEL+E LG   A +   +       L G + A+L VG  H         AH    P 
Sbjct: 54  VIGGELLEALGA--ASDLAFIASAGAQGLLGHIGAELLVGERHEFAWRSPAAAHHPTRPA 111

Query: 164 NP-RRQHQRQQQPQ 176
            P RR HQ+QQQ Q
Sbjct: 112 APCRRHHQQQQQDQ 125


>gi|239755661 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 116 LVEGLGVLLAQEGLVVVLEALVVLRGPLAQL 146
           ++ GLGV+L Q G  V+LE+L      LAQL
Sbjct: 1   MLGGLGVVLGQSGAAVLLESLKARGQALAQL 31


>gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 404

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 86  QLLSSDKAIPIIVDSINNLPAPLLALV---RGELVEGLGVLLAQEGLVVVLEALVVLRGP 142
           Q+ + DKA+  + D+   L A + ALV   RGE+ E L  L   EGL+  + A VV    
Sbjct: 175 QVGALDKALAAL-DARVGLLARVRALVLRERGEVAEALLALATAEGLLAGVHAQVV---- 229

Query: 143 LAQLRVGPH--HALFAHRG 159
             Q+RV P    AL AH G
Sbjct: 230 -HQVRVTPEALPALAAHVG 247


>gi|239750175 PREDICTED: hypothetical protein XP_002347304 [Homo
           sapiens]
          Length = 155

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 116 LVEGLGVLLAQEGLVVVLEALVVLRGPLAQL 146
           ++ GLGV+L Q G  V+LE+L      LAQL
Sbjct: 1   MLGGLGVVLGQSGAAVLLESLKARGQALAQL 31


>gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 404

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 86  QLLSSDKAIPIIVDSINNLPAPLLALV---RGELVEGLGVLLAQEGLVVVLEALVVLRGP 142
           Q+ + DKA+  + D+   L A + ALV   RGE+ E L  L   EGL+  + A VV    
Sbjct: 175 QVGALDKALAAL-DARVGLLARVRALVLRERGEVAEALLALATAEGLLAGVHAQVV---- 229

Query: 143 LAQLRVGPH--HALFAHRG 159
             Q+RV P    AL AH G
Sbjct: 230 -HQVRVTPEALPALAAHVG 247


>gi|239744486 PREDICTED: hypothetical protein XP_002343172 [Homo
           sapiens]
          Length = 155

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 116 LVEGLGVLLAQEGLVVVLEALVVLRGPLAQL 146
           ++ GLGV+L Q G  V+LE+L      LAQL
Sbjct: 1   MLGGLGVVLGQSGAAVLLESLKARGQALAQL 31


>gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 404

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 86  QLLSSDKAIPIIVDSINNLPAPLLALV---RGELVEGLGVLLAQEGLVVVLEALVVLRGP 142
           Q+ + DKA+  + D+   L A + ALV   RGE+ E L  L   EGL+  + A VV    
Sbjct: 175 QVGALDKALAAL-DARVGLLARVRALVLRERGEVAEALLALATAEGLLAGVHAQVV---- 229

Query: 143 LAQLRVGPH--HALFAHRG 159
             Q+RV P    AL AH G
Sbjct: 230 -HQVRVTPEALPALAAHVG 247


>gi|14149987 WD repeat domain 24 [Homo sapiens]
          Length = 790

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 5/106 (4%)

Query: 60  VPIIILPDFGDIIKDVSFLHPFDPGFQLLSSDKAIPIIVDSINNLPAPLLALVRGELVEG 119
           VP  +  +  D+   +++ HP DP F LLS  K   +      +   P    V     EG
Sbjct: 288 VPAAMFEEHRDVTTGIAWRHPHDPSF-LLSGSKDSSLCQHLFRDASQP----VERANPEG 342

Query: 120 LGVLLAQEGLVVVLEALVVLRGPLAQLRVGPHHALFAHRGLGPQNP 165
           L   L  +      E+LV              H +F  R L P  P
Sbjct: 343 LCYGLFGDLAFAAKESLVAAESGRKPYTGDRRHPIFFKRKLDPAEP 388


>gi|29788760 diacylglycerol kinase, eta isoform 1 [Homo sapiens]
          Length = 1164

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 1    MAMCSKKSENSIVLICPAFTAECLI 25
            M +CS+ +E  I  IC A T  CL+
Sbjct: 992  MQLCSQAAEELITRICDAATIHCLL 1016


>gi|29788751 diacylglycerol kinase, eta isoform 2 [Homo sapiens]
          Length = 1220

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 1    MAMCSKKSENSIVLICPAFTAECLI 25
            M +CS+ +E  I  IC A T  CL+
Sbjct: 992  MQLCSQAAEELITRICDAATIHCLL 1016


>gi|14719426 galactose-3-O-sulfotransferase 3 [Homo sapiens]
          Length = 431

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 139 LRGPLAQLRVGPHHALFAHRGL 160
           LR P A  R G H A+FAH  L
Sbjct: 184 LRAPEAYYRAGEHFAMFAHNTL 205


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.144    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,949,565
Number of Sequences: 37866
Number of extensions: 297595
Number of successful extensions: 902
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 21
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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