Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288449 Sequence: fasta or formatted (122aa) NCBI GI: 239749645
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {122aa} PREDICTED: hypothetical protein XP_002342973
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         11           2
 C cysteine            4.9          6           1
 D aspartate           0.0          0           0
 E glutamate           3.3          4           2
 F phenylalanine       8.2         10           1
 G glycine             9.0         11           2
 H histidine           3.3          4           1
 I isoleucine          2.5          3           1
 K lysine              4.9          6           1
 L leucine             8.2         10           1
 M methionine          0.8          1           1
 N asparagine          3.3          4           1
 P proline             9.8         12           2
 Q glutamine           2.5          3           1
 R arginine            8.2         10           2
 S serine             10.7         13           2
 T threonine           5.7          7           1
 V valine              4.1          5           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288449          0.996   PREDICTED: hypothetical protein XP_002342973 
YDJC                  0.021   YdjC homolog 
LOC100293892          0.017   PREDICTED: hypothetical protein 
LOC100289756          0.017   PREDICTED: hypothetical protein XP_002348004 
LOC100286981          0.017   PREDICTED: hypothetical protein XP_002343724 
LOC100293026          0.009   PREDICTED: hypothetical protein 
LOC100290277          0.009   PREDICTED: hypothetical protein XP_002347308 
LOC100132426          0.009   PREDICTED: similar to hCG1742442 
LOC100290023          0.009   PREDICTED: hypothetical protein XP_002348147 
C7orf30               0.009   hypothetical protein LOC115416 
CYP27B1               0.004   cytochrome P450, family 27, subfamily B, polypeptide ...
LOC100287933          0.004   PREDICTED: hypothetical protein XP_002343257 
FAM47A                0.004   hypothetical protein LOC158724 
LOC100288936          0.004   PREDICTED: hypothetical protein XP_002343175 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press