Guide to the Human Genome
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Name: LOC100288936 Sequence: fasta or formatted (86aa) NCBI GI: 239744510
Description:

PREDICTED: hypothetical protein XP_002343175

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.3          2           1
 C cysteine            4.7          4           1
 D aspartate           3.5          3           1
 E glutamate           3.5          3           1
 F phenylalanine       3.5          3           1
 G glycine             7.0          6           2
 H histidine           2.3          2           1
 I isoleucine          3.5          3           1
 K lysine              5.8          5           1
 L leucine            12.8         11           2
 M methionine          2.3          2           1
 N asparagine          1.2          1           1
 P proline             8.1          7           1
 Q glutamine           5.8          5           2
 R arginine            5.8          5           2
 S serine             11.6         10           2
 T threonine           3.5          3           1
 V valine              8.1          7           1
 W tryptophan          1.2          1           1
 Y tyrosine            3.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343175 
LOC100293026          0.962   PREDICTED: hypothetical protein 
LOC100290277          0.962   PREDICTED: hypothetical protein XP_002347308 
BRIP1                 0.026   BRCA1 interacting protein C-terminal helicase 1 [Hom...
NOM1                  0.019   nucleolar protein with MIF4G domain 1 
MYF5                  0.013   myogenic factor 5 
MEPCE                 0.013   bin3, bicoid-interacting 3 
LOC100288449          0.006   PREDICTED: hypothetical protein 
GSS                   0.006   glutathione synthetase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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