Search of human proteins with 117956389

Search of human proteins with 117956389

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117956389 KH homology domain containing 1 [Homo sapiens]
         (164 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117956389 KH homology domain containing 1 [Homo sapiens]           350   4e-97
gi|186910188 hypothetical protein LOC100129128 [Homo sapiens]         226   9e-60
gi|122937452 oocyte expressed protein homolog [Homo sapiens]           36   0.013
gi|70608179 developmental pluripotency associated 5 [Homo sapiens]     30   0.72 
gi|116534990 ankyrin-like protein 1 [Homo sapiens]                     28   2.7  
gi|34335253 disks large-associated protein 4 isoform a [Homo sap...    28   4.6  
gi|22749415 integral membrane protein 1 [Homo sapiens]                 27   6.1  
gi|51173722 bromodomain and PHD finger-containing protein 1 isof...    27   6.1  
gi|51173720 bromodomain and PHD finger-containing protein 1 isof...    27   6.1  

>gi|117956389 KH homology domain containing 1 [Homo sapiens]
          Length = 164

 Score =  350 bits (897), Expect = 4e-97
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MDMGTSALSKKPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLESW 60
           MDMGTSALSKKPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLESW
Sbjct: 1   MDMGTSALSKKPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLESW 60

Query: 61  FTATGQTRVTVVGPHRARQWLLHMFCCVGSQDSYHHARGLEMLERVRSQPLTNDDLVTSI 120
           FTATGQTRVTVVGPHRARQWLLHMFCCVGSQDSYHHARGLEMLERVRSQPLTNDDLVTSI
Sbjct: 61  FTATGQTRVTVVGPHRARQWLLHMFCCVGSQDSYHHARGLEMLERVRSQPLTNDDLVTSI 120

Query: 121 SVPPYTGDLSLAPRISGTVCLSVPQPSPYQVIGCSGFHLSSLYP 164
           SVPPYTGDLSLAPRISGTVCLSVPQPSPYQVIGCSGFHLSSLYP
Sbjct: 121 SVPPYTGDLSLAPRISGTVCLSVPQPSPYQVIGCSGFHLSSLYP 164


>gi|186910188 hypothetical protein LOC100129128 [Homo sapiens]
          Length = 128

 Score =  226 bits (575), Expect = 9e-60
 Identities = 108/128 (84%), Positives = 117/128 (91%)

Query: 1   MDMGTSALSKKPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLESW 60
           M +GTSALSK+PWWTLP+NFH+PMVFHMEEDQEELIFG  DTYLRCIE+HSHTLIQLE  
Sbjct: 1   MAVGTSALSKEPWWTLPENFHSPMVFHMEEDQEELIFGLDDTYLRCIELHSHTLIQLERC 60

Query: 61  FTATGQTRVTVVGPHRARQWLLHMFCCVGSQDSYHHARGLEMLERVRSQPLTNDDLVTSI 120
           FTATGQTRVTVVGP  A+QWLL MF CVGSQDS  HARGL+MLERVRSQPLTNDDLVTS+
Sbjct: 61  FTATGQTRVTVVGPPMAKQWLLLMFHCVGSQDSKCHARGLKMLERVRSQPLTNDDLVTSV 120

Query: 121 SVPPYTGD 128
           S+PPYTGD
Sbjct: 121 SLPPYTGD 128


>gi|122937452 oocyte expressed protein homolog [Homo sapiens]
          Length = 149

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 11  KPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLESWFTATGQTRVT 70
           +PWW   Q    P+VF++E    + +FG     +  +E  S  L+ ++    +     +T
Sbjct: 37  RPWWFPVQELRDPLVFYLEAWLADELFGPDRAIIPEMEWTSQALLTVDI-VDSGNLVEIT 95

Query: 71  VVGPHRARQWLLHMFCCVGSQDSYHHARGLEM 102
           V G  R +  +  M  C+      H AR  +M
Sbjct: 96  VFGRPRVQNRVKSMLLCLAWFHREHRARAEKM 127


>gi|70608179 developmental pluripotency associated 5 [Homo
          sapiens]
          Length = 116

 Score = 30.4 bits (67), Expect = 0.72
 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 12 PWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLESWFTATGQTRVTV 71
          PW  +P++   P VF ++    + IFG   + +  IE  S  +++L++   ++  T V V
Sbjct: 12 PWVKVPEDLKDPEVFQVQTRLLKAIFGPDGSRIPYIEQVSKAMLELKA-LESSDLTEVVV 70

Query: 72 VGPHRAR---QWLL 82
           G +  +   +W+L
Sbjct: 71 YGSYLYKLRTKWML 84


>gi|116534990 ankyrin-like protein 1 [Homo sapiens]
          Length = 1119

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 47   IEVHSHTLIQLESWFTATGQTRVTVVGPHRARQ--WLLHMFC---CVGS--QDSYHHARG 99
            +E+H+    +L  WF      + T+V P++ R    L H+FC   C G   Q+  +  + 
Sbjct: 980  VELHTSLEKKLPLWFLRKVDQKSTIVYPNKPRSGGMLFHIFCFLFCTGEIRQEIPNADKS 1039

Query: 100  LEM 102
            LEM
Sbjct: 1040 LEM 1042


>gi|34335253 disks large-associated protein 4 isoform a [Homo
           sapiens]
          Length = 989

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 93  SYHHARGLEMLERVRSQPLTNDDLVT--SISVPPYTGDLSLAPRISGTVCLSVPQPSP 148
           SY  +R    L  +++     +D V+  S+S PP TG LS +  +  + CL   + +P
Sbjct: 504 SYFRSRSHSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKTP 561


>gi|22749415 integral membrane protein 1 [Homo sapiens]
          Length = 705

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 18/72 (25%), Positives = 29/72 (40%)

Query: 55  IQLESWFTATGQTRVTVVGPHRARQWLLHMFCCVGSQDSYHHARGLEMLERVRSQPLTND 114
           I+   ++T TG+ RV   G       L++  C       Y  A+     +RVR+  + N 
Sbjct: 612 IKENDYYTPTGEFRVDREGSPVLLNCLMYKMCYYRFGQVYTEAKRPPGFDRVRNAEIGNK 671

Query: 115 DLVTSISVPPYT 126
           D    +    YT
Sbjct: 672 DFELDVLEEAYT 683


>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform 2
            [Homo sapiens]
          Length = 1214

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 9    SKKPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLES 59
            +K+ W  LP+    P+  + + D+E+++ G      + +++  H  +Q  S
Sbjct: 1150 NKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRS 1200


>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform 1
            [Homo sapiens]
          Length = 1220

 Score = 27.3 bits (59), Expect = 6.1
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 9    SKKPWWTLPQNFHAPMVFHMEEDQEELIFGHGDTYLRCIEVHSHTLIQLES 59
            +K+ W  LP+    P+  + + D+E+++ G      + +++  H  +Q  S
Sbjct: 1156 NKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRS 1206


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,274,222
Number of Sequences: 37866
Number of extensions: 325265
Number of successful extensions: 558
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 9
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.