Search of human proteins with 117647228

Search of human proteins with 117647228

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|117647228 hypothetical protein LOC54827 isoform 2 [Homo
sapiens]
         (260 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|117647230 hypothetical protein LOC54827 isoform 1 [Homo sapiens]   535   e-152
gi|117647228 hypothetical protein LOC54827 isoform 2 [Homo sapiens]   535   e-152
gi|169234964 hypothetical protein LOC120400 [Homo sapiens]            311   4e-85
gi|210147446 hypothetical protein LOC120406 [Homo sapiens]            287   7e-78
gi|21450781 hypothetical protein LOC91775 [Homo sapiens]              151   5e-37
gi|197333800 hypothetical protein LOC91775 [Homo sapiens]             151   5e-37
gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens]    35   0.050
gi|170784865 CAS1 domain containing 1 [Homo sapiens]                   32   0.42 

>gi|117647230 hypothetical protein LOC54827 isoform 1 [Homo sapiens]
          Length = 544

 Score =  535 bits (1377), Expect = e-152
 Identities = 260/260 (100%), Positives = 260/260 (100%)

Query: 1   MEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGK 60
           MEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGK
Sbjct: 285 MEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGK 344

Query: 61  LIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIG 120
           LIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIG
Sbjct: 345 LIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIG 404

Query: 121 SMTYSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLR 180
           SMTYSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLR
Sbjct: 405 SMTYSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLR 464

Query: 181 SPDTMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNN 240
           SPDTMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNN
Sbjct: 465 SPDTMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNN 524

Query: 241 VHPPQHVVGNQINILLNYIC 260
           VHPPQHVVGNQINILLNYIC
Sbjct: 525 VHPPQHVVGNQINILLNYIC 544


>gi|117647228 hypothetical protein LOC54827 isoform 2 [Homo sapiens]
          Length = 260

 Score =  535 bits (1377), Expect = e-152
 Identities = 260/260 (100%), Positives = 260/260 (100%)

Query: 1   MEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGK 60
           MEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGK
Sbjct: 1   MEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGK 60

Query: 61  LIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIG 120
           LIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIG
Sbjct: 61  LIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIG 120

Query: 121 SMTYSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLR 180
           SMTYSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLR
Sbjct: 121 SMTYSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLR 180

Query: 181 SPDTMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNN 240
           SPDTMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNN
Sbjct: 181 SPDTMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNN 240

Query: 241 VHPPQHVVGNQINILLNYIC 260
           VHPPQHVVGNQINILLNYIC
Sbjct: 241 VHPPQHVVGNQINILLNYIC 260


>gi|169234964 hypothetical protein LOC120400 [Homo sapiens]
          Length = 405

 Score =  311 bits (797), Expect = 4e-85
 Identities = 146/257 (56%), Positives = 188/257 (73%), Gaps = 4/257 (1%)

Query: 7   ISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCS---LATVKMKECLRGKLIY 63
           I V+ CNK    ++E C+ GM   +P G+  +  W    C+   L T+K+  CL+GKLIY
Sbjct: 150 IDVTNCNKRE-KIEETCQVGMKPPVPGGYTLQGKWITTFCNQVQLDTIKINGCLKGKLIY 208

Query: 64  LMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIGSMT 123
           L+GDST+RQW+ YF   + TLK  DLHE+G  +  L +D +R+  IQW+K+ YP +    
Sbjct: 209 LLGDSTLRQWIYYFPKVVKTLKFFDLHETGIFKKHLLLDAERHTQIQWKKHSYPFVTFQL 268

Query: 124 YSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLRSPD 183
           YS+ + +Y+ R IDR  G+KNT IVI+ GQHFRPFPID+FIRRA+ V KAI+ L LRSP 
Sbjct: 269 YSLIDHDYIPREIDRLSGDKNTAIVITFGQHFRPFPIDIFIRRAIGVQKAIERLFLRSPA 328

Query: 184 TMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAYGTNNVHP 243
           T VIIKTENIREM+ + ERF DFHGYI YLI+KDIF+DL+V IIDAWD+TIAYGT+ +HP
Sbjct: 329 TKVIIKTENIREMHIETERFGDFHGYIHYLIMKDIFKDLNVGIIDAWDMTIAYGTDTIHP 388

Query: 244 PQHVVGNQINILLNYIC 260
           P HV+GNQIN+ LNYIC
Sbjct: 389 PDHVIGNQINMFLNYIC 405


>gi|210147446 hypothetical protein LOC120406 [Homo sapiens]
          Length = 559

 Score =  287 bits (734), Expect = 7e-78
 Identities = 138/264 (52%), Positives = 184/264 (69%), Gaps = 5/264 (1%)

Query: 1   MEKFNTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLA----TVKMKEC 56
           M+ F  I V  CNK    +K+ C+ GM +  PSG+  +  W    C       T  + +C
Sbjct: 297 MKNFTPIEVIPCNKSE-NIKKNCQIGMKTPFPSGYTLKKMWITAFCKQIKFNETKNINDC 355

Query: 57  LRGKLIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQHQLAVDLDRNINIQWQKYCY 116
           L  KLIYLMGDST+ QW+ Y + ++ TLK  D H +G  +  + +D++R+I IQW+K+ +
Sbjct: 356 LERKLIYLMGDSTLHQWIYYLQKAVKTLKYFDHHGAGIFKTHVLLDVERHILIQWKKHGH 415

Query: 117 PLIGSMTYSVKEMEYLTRAIDRTGGEKNTVIVISLGQHFRPFPIDVFIRRALNVHKAIQH 176
           P +    +SVK+  Y+ R ID+  G+KNT IVI+LGQHFRPFPI++FIRRA+N+ KAI+ 
Sbjct: 416 PFVTKKLFSVKDENYIPREIDQVAGDKNTAIVITLGQHFRPFPINIFIRRAINIQKAIER 475

Query: 177 LLLRSPDTMVIIKTENIREMYNDAERFSDFHGYIQYLIIKDIFQDLSVSIIDAWDITIAY 236
           L LRSP+T VI+KTEN RE+  +AE FSDFHGYIQ LII+DIF DL+V IIDAWD+TIAY
Sbjct: 476 LFLRSPETKVILKTENTREIEQNAEMFSDFHGYIQNLIIRDIFVDLNVGIIDAWDMTIAY 535

Query: 237 GTNNVHPPQHVVGNQINILLNYIC 260
            TNN HPP +V+ NQI + LNYIC
Sbjct: 536 CTNNAHPPDYVIQNQIGMFLNYIC 559


>gi|21450781 hypothetical protein LOC91775 [Homo sapiens]
          Length = 559

 Score =  151 bits (382), Expect = 5e-37
 Identities = 79/239 (33%), Positives = 142/239 (59%), Gaps = 7/239 (2%)

Query: 28  TSTIPSGHVWRNTWNPVSCSLATVK----MKECLRGKLIYLMGDSTIRQWMEYFKASINT 83
           + T PSG+ +++ W P    +        + ECL+ K+++L GDSTIRQW EY    +  
Sbjct: 318 SGTFPSGYYYKDQWRPRKFKMRQFNDPDNITECLQRKVVHLFGDSTIRQWFEYLTTFVPD 377

Query: 84  LKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIGSMTYSVKEMEYLTRAIDRTGGEK 143
           L   +L     +   LAVD   NI ++++ +  P+  +  +S  E+ Y+   ++   G K
Sbjct: 378 LVEFNLGSPKNVGPFLAVDQKHNILLKYRCHGPPIRFTTVFS-NELHYVANELNGIVGGK 436

Query: 144 NTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLRSPDTMVIIKTENIREMYNDAERF 203
           NTV+ I++  HF  FP++V+IRR  N+ +A+  LL RSP T+V+I+T N +E+  +   F
Sbjct: 437 NTVVAIAVWSHFSTFPLEVYIRRLRNIRRAVVRLLDRSPKTVVVIRTANAQELGPEVSLF 496

Query: 204 -SDFHGYIQYLIIKDIFQDLSVSIIDAWDITIA-YGTNNVHPPQHVVGNQINILLNYIC 260
            SD++ +    I++ +F  + V ++DAW++T+A Y  + +HP + +V NQ+++ L+++C
Sbjct: 497 NSDWYNFQLDTILRRMFSGVGVYLVDAWEMTLAHYLPHKLHPDEVIVKNQLDMFLSFVC 555


>gi|197333800 hypothetical protein LOC91775 [Homo sapiens]
          Length = 559

 Score =  151 bits (382), Expect = 5e-37
 Identities = 79/239 (33%), Positives = 142/239 (59%), Gaps = 7/239 (2%)

Query: 28  TSTIPSGHVWRNTWNPVSCSLATVK----MKECLRGKLIYLMGDSTIRQWMEYFKASINT 83
           + T PSG+ +++ W P    +        + ECL+ K+++L GDSTIRQW EY    +  
Sbjct: 318 SGTFPSGYYYKDQWRPRKFKMRQFNDPDNITECLQRKVVHLFGDSTIRQWFEYLTTFVPD 377

Query: 84  LKSVDLHESGKLQHQLAVDLDRNINIQWQKYCYPLIGSMTYSVKEMEYLTRAIDRTGGEK 143
           L   +L     +   LAVD   NI ++++ +  P+  +  +S  E+ Y+   ++   G K
Sbjct: 378 LVEFNLGSPKNVGPFLAVDQKHNILLKYRCHGPPIRFTTVFS-NELHYVANELNGIVGGK 436

Query: 144 NTVIVISLGQHFRPFPIDVFIRRALNVHKAIQHLLLRSPDTMVIIKTENIREMYNDAERF 203
           NTV+ I++  HF  FP++V+IRR  N+ +A+  LL RSP T+V+I+T N +E+  +   F
Sbjct: 437 NTVVAIAVWSHFSTFPLEVYIRRLRNIRRAVVRLLDRSPKTVVVIRTANAQELGPEVSLF 496

Query: 204 -SDFHGYIQYLIIKDIFQDLSVSIIDAWDITIA-YGTNNVHPPQHVVGNQINILLNYIC 260
            SD++ +    I++ +F  + V ++DAW++T+A Y  + +HP + +V NQ+++ L+++C
Sbjct: 497 NSDWYNFQLDTILRRMFSGVGVYLVDAWEMTLAHYLPHKLHPDEVIVKNQLDMFLSFVC 555


>gi|157671945 hypothetical protein LOC79974 isoform 1 [Homo sapiens]
          Length = 1026

 Score = 35.4 bits (80), Expect = 0.050
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 37  WRN-TWNPVSCS---LATVKMKECLRGKLIYLMGDSTIRQWMEYFKASIN-TLKSVDLHE 91
           WR  TW P +C    L   ++++CL G+ I  +GDST R  M Y    +N TL+      
Sbjct: 742 WREITWQPHNCQYGVLTKPQLQQCLGGRKILFIGDSTNRGIMYYLIERLNETLQEWQKVH 801

Query: 92  SGKLQHQL 99
             K  H +
Sbjct: 802 GTKFYHNV 809


>gi|170784865 CAS1 domain containing 1 [Homo sapiens]
          Length = 797

 Score = 32.3 bits (72), Expect = 0.42
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 41  WNPVSCSLATVKMKE---CLRGKLIYLMGDSTIRQWMEYFKASINTLKSVDLHESGKLQH 97
           W P SC +   K+ E   CL  K I  +GDS IRQ    F   IN        E G    
Sbjct: 64  WQPHSCMMHKYKISEAKNCLVDKHIAFIGDSRIRQLFYSFVKIINP----QFKEEGNKHE 119

Query: 98  QLAVDLDRNINIQWQKYCYPLI-GSMTYSVK 127
            +  + D+  +++     +P + GSM   +K
Sbjct: 120 NIPFE-DKTASVKVDFLWHPEVNGSMKQCIK 149


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,489,261
Number of Sequences: 37866
Number of extensions: 367223
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 720
Number of HSP's gapped (non-prelim): 8
length of query: 260
length of database: 18,247,518
effective HSP length: 100
effective length of query: 160
effective length of database: 14,460,918
effective search space: 2313746880
effective search space used: 2313746880
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.