Search of human proteins with 239749228

Search of human proteins with 239749228

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo
sapiens]
         (87 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo ...   178   9e-46
gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo ...   178   9e-46
gi|17105394 ribosomal protein L23a [Homo sapiens]                      84   3e-17
gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo ...    75   8e-15
gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens]           48   1e-06
gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens]           48   1e-06
gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo ...    48   1e-06
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo...    28   2.0  
gi|19913406 DNA topoisomerase II, alpha isozyme [Homo sapiens]         27   4.5  
gi|38788193 sphingosine-1-phosphate receptor 3 [Homo sapiens]          26   5.9  

>gi|239749228 PREDICTED: hypothetical protein XP_002346971 [Homo
          sapiens]
          Length = 87

 Score =  178 bits (451), Expect = 9e-46
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
          MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML
Sbjct: 1  MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60

Query: 61 WILPTKLGSTLLLTQQNWDIANKIGVI 87
          WILPTKLGSTLLLTQQNWDIANKIGVI
Sbjct: 61 WILPTKLGSTLLLTQQNWDIANKIGVI 87


>gi|239743319 PREDICTED: hypothetical protein XP_002342821 [Homo
          sapiens]
          Length = 87

 Score =  178 bits (451), Expect = 9e-46
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
          MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML
Sbjct: 1  MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60

Query: 61 WILPTKLGSTLLLTQQNWDIANKIGVI 87
          WILPTKLGSTLLLTQQNWDIANKIGVI
Sbjct: 61 WILPTKLGSTLLLTQQNWDIANKIGVI 87


>gi|17105394 ribosomal protein L23a [Homo sapiens]
          Length = 156

 Score = 83.6 bits (205), Expect = 3e-17
 Identities = 48/87 (55%), Positives = 54/87 (62%), Gaps = 17/87 (19%)

Query: 1   MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
           MKKIEDNNTLVF VDVKA KHQIKQAVKKLYD DVAKV+ LIRPD  ++  +        
Sbjct: 87  MKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVR------- 139

Query: 61  WILPTKLGSTLLLTQQNWDIANKIGVI 87
                     L       D+ANKIG+I
Sbjct: 140 ----------LAPDYDALDVANKIGII 156


>gi|169206362 PREDICTED: similar to ribosomal protein L23a [Homo
           sapiens]
          Length = 152

 Score = 75.5 bits (184), Expect = 8e-15
 Identities = 42/72 (58%), Positives = 51/72 (70%)

Query: 1   MKKIEDNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITML 60
           +KK E+NNTLVFTVDVKA KHQI+QAVKKLYD+DVAKV  LI PD  ++  +        
Sbjct: 77  VKKTEENNTLVFTVDVKAKKHQIRQAVKKLYDSDVAKVTTLICPDKEKKAYVRLAPDYDA 136

Query: 61  WILPTKLGSTLL 72
             + TKLGS+ L
Sbjct: 137 LDVATKLGSSKL 148


>gi|239753756 PREDICTED: similar to hCG1776279 [Homo sapiens]
          Length = 133

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 6   DNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVH 39
           + NTLVFTVDVKA KHQ++QA+K+ +D  VAKV+
Sbjct: 75  EGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVN 108


>gi|239748324 PREDICTED: similar to hCG1776279 [Homo sapiens]
          Length = 133

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 6   DNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVH 39
           + NTLVFTVDVKA KHQ++QA+K+ +D  VAKV+
Sbjct: 75  EGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVN 108


>gi|239742221 PREDICTED: hypothetical protein XP_002342458 [Homo
           sapiens]
          Length = 133

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 22/34 (64%), Positives = 29/34 (85%)

Query: 6   DNNTLVFTVDVKATKHQIKQAVKKLYDTDVAKVH 39
           + NTLVFTVDVKA KHQ++QA+K+ +D  VAKV+
Sbjct: 75  EGNTLVFTVDVKANKHQMEQAMKEFHDICVAKVN 108


>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
           sapiens]
          Length = 2517

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 23  IKQAVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITMLWILPTKLGSTLLLTQ 75
           + QAV+++ + D    H L+RPD   R KL  +L+    +L  ++G  +++ Q
Sbjct: 705 LSQAVEEVTERD----HPLVRPDRSLREKLVKMLVE---LLTNQVGEKMVVVQ 750


>gi|19913406 DNA topoisomerase II, alpha isozyme [Homo sapiens]
          Length = 1531

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 19/61 (31%)

Query: 26 AVKKLYDTDVAKVHALIRPDAGRRHKLHWLLITMLWILPTKLGSTLLLTQQNWDIANKIG 85
          +V+++Y       H L+RPD                   T +GS  L+TQQ W     +G
Sbjct: 29 SVERIYQKKTQLEHILLRPD-------------------TYIGSVELVTQQMWVYDEDVG 69

Query: 86 V 86
          +
Sbjct: 70 I 70


>gi|38788193 sphingosine-1-phosphate receptor 3 [Homo sapiens]
          Length = 378

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 42  IRP-DAGRRHKLHWLLITMLWILPTKLGSTLLL 73
           +RP DA +RH++ +LLI M W++   LG+  +L
Sbjct: 143 MRPYDANKRHRV-FLLIGMCWLIAFTLGALPIL 174


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,928,597
Number of Sequences: 37866
Number of extensions: 98458
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 13
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.