Guide to the Human Genome
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Search of human proteins with 239748610

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
sapiens]
         (64 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ...   124   2e-29
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ...   124   2e-29
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ...   124   2e-29
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ...   102   7e-23
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ...   102   7e-23
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ...   102   7e-23
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ...    99   6e-22
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ...    99   6e-22
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ...    99   6e-22
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ...    98   2e-21
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ...    98   2e-21
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ...    98   2e-21
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ...    91   3e-19
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ...    91   3e-19
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ...    91   3e-19
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ...    84   2e-17
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ...    84   2e-17
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]            83   4e-17
gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand...    82   9e-17
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ...    77   2e-15
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ...    77   2e-15
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ...    77   2e-15
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ...    67   2e-12
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ...    67   2e-12
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ...    67   2e-12
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ...    64   2e-11
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]            64   3e-11
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ...    64   3e-11
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]            58   2e-09
gi|52317176 olfactory receptor, family 10, subfamily K, member 2...    26   6.0  

>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 64

 Score =  124 bits (311), Expect = 2e-29
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE
Sbjct: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
          sapiens]
          Length = 64

 Score =  124 bits (311), Expect = 2e-29
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE
Sbjct: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
          sapiens]
          Length = 64

 Score =  124 bits (311), Expect = 2e-29
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE
Sbjct: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score =  102 bits (254), Expect = 7e-23
 Identities = 54/64 (84%), Positives = 55/64 (85%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHPVQLGLQDA SPIIEELLTFH HALIII LISSLVLY ISLIL T LTH S I AQE
Sbjct: 1  MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60

Query: 61 IETV 64
          I+TV
Sbjct: 61 IKTV 64


>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
          sapiens]
          Length = 64

 Score =  102 bits (254), Expect = 7e-23
 Identities = 54/64 (84%), Positives = 55/64 (85%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHPVQLGLQDA SPIIEELLTFH HALIII LISSLVLY ISLIL T LTH S I AQE
Sbjct: 1  MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60

Query: 61 IETV 64
          I+TV
Sbjct: 61 IKTV 64


>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
          sapiens]
          Length = 64

 Score =  102 bits (254), Expect = 7e-23
 Identities = 54/64 (84%), Positives = 55/64 (85%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHPVQLGLQDA SPIIEELLTFH HALIII LISSLVLY ISLIL T LTH S I AQE
Sbjct: 1  MAHPVQLGLQDATSPIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQE 60

Query: 61 IETV 64
          I+TV
Sbjct: 61 IKTV 64


>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 99.4 bits (246), Expect = 6e-22
 Identities = 53/64 (82%), Positives = 54/64 (84%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MA+PVQLGLQD  SPIIEELLTFHDHALIIIFLISSLVL  ISLIL T LTH   I AQE
Sbjct: 1  MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
          sapiens]
          Length = 64

 Score = 99.4 bits (246), Expect = 6e-22
 Identities = 53/64 (82%), Positives = 54/64 (84%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MA+PVQLGLQD  SPIIEELLTFHDHALIIIFLISSLVL  ISLIL T LTH   I AQE
Sbjct: 1  MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
          sapiens]
          Length = 64

 Score = 99.4 bits (246), Expect = 6e-22
 Identities = 53/64 (82%), Positives = 54/64 (84%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MA+PVQLGLQD  SPIIEELLTFHDHALIIIFLISSLVL  ISLIL T LTH   I AQE
Sbjct: 1  MAYPVQLGLQDTTSPIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 64

 Score = 97.8 bits (242), Expect = 2e-21
 Identities = 51/64 (79%), Positives = 52/64 (81%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHP QLGLQDA SPIIEELL FHDH LIIIFLISSLVLY ISLIL T L H S   AQE
Sbjct: 1  MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60

Query: 61 IETV 64
          +ETV
Sbjct: 61 VETV 64


>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
          sapiens]
          Length = 64

 Score = 97.8 bits (242), Expect = 2e-21
 Identities = 51/64 (79%), Positives = 52/64 (81%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHP QLGLQDA SPIIEELL FHDH LIIIFLISSLVLY ISLIL T L H S   AQE
Sbjct: 1  MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60

Query: 61 IETV 64
          +ETV
Sbjct: 61 VETV 64


>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
          sapiens]
          Length = 64

 Score = 97.8 bits (242), Expect = 2e-21
 Identities = 51/64 (79%), Positives = 52/64 (81%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAHP QLGLQDA SPIIEELL FHDH LIIIFLISSLVLY ISLIL T L H S   AQE
Sbjct: 1  MAHPFQLGLQDATSPIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQE 60

Query: 61 IETV 64
          +ETV
Sbjct: 61 VETV 64


>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 48/64 (75%), Positives = 50/64 (78%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAH VQLGLQD    I+EELLTFHDH LIIIFLIS LVLY ISLI  T LTH S I AQE
Sbjct: 1  MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60

Query: 61 IETV 64
          I+TV
Sbjct: 61 IQTV 64


>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 48/64 (75%), Positives = 50/64 (78%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAH VQLGLQD    I+EELLTFHDH LIIIFLIS LVLY ISLI  T LTH S I AQE
Sbjct: 1  MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60

Query: 61 IETV 64
          I+TV
Sbjct: 61 IQTV 64


>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
          sapiens]
          Length = 64

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 48/64 (75%), Positives = 50/64 (78%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAH VQLGLQD    I+EELLTFHDH LIIIFLIS LVLY ISLI  T LTH S I AQE
Sbjct: 1  MAHAVQLGLQDTTFLIMEELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQE 60

Query: 61 IETV 64
          I+TV
Sbjct: 61 IQTV 64


>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 2e-17
 Identities = 44/64 (68%), Positives = 48/64 (75%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAH  Q+GLQDA SPIIEEL+ FHDHALIIIFLI  LVLY + L L T LT+ S    QE
Sbjct: 1  MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
          sapiens]
          Length = 64

 Score = 84.0 bits (206), Expect = 2e-17
 Identities = 44/64 (68%), Positives = 48/64 (75%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAH  Q+GLQDA SPIIEEL+ FHDHALIIIFLI  LVLY + L L T LT+ S    QE
Sbjct: 1  MAHAAQVGLQDATSPIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQE 60

Query: 61 IETV 64
          IETV
Sbjct: 61 IETV 64


>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
          Length = 227

 Score = 83.2 bits (204), Expect = 4e-17
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAH  Q+GLQDA SPI+EEL+TFHDHAL+IIFLI  LVLY + L L T LT+ +   AQE
Sbjct: 1  MAHAAQVGLQDATSPIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQE 60

Query: 61 IETV 64
          +ETV
Sbjct: 61 METV 64


>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
          neanderthalensis]
          Length = 227

 Score = 82.0 bits (201), Expect = 9e-17
 Identities = 42/64 (65%), Positives = 49/64 (76%)

Query: 1  MAHPVQLGLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQE 60
          MAH  Q+GLQDA SPI+EEL+ FHDHAL+IIFLI  LVLY + L L T LT+ S   AQE
Sbjct: 1  MAHAAQVGLQDATSPIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQE 60

Query: 61 IETV 64
          +ETV
Sbjct: 61 METV 64


>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
          sapiens]
          Length = 53

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
          + P   +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S  HAQEIETV
Sbjct: 2  LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
          sapiens]
          Length = 53

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
          + P   +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S  HAQEIETV
Sbjct: 2  LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
          sapiens]
          Length = 53

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
          + P   +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S  HAQEIETV
Sbjct: 2  LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 63

 Score = 67.4 bits (163), Expect = 2e-12
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 14 SPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
          SPIIEEL+ FHDHALIIIFLIS LVLY + L L T L + S   AQE+ETV
Sbjct: 6  SPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
          sapiens]
          Length = 63

 Score = 67.4 bits (163), Expect = 2e-12
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 14 SPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
          SPIIEEL+ FHDHALIIIFLIS LVLY + L L T L + S   AQE+ETV
Sbjct: 6  SPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
          sapiens]
          Length = 63

 Score = 67.4 bits (163), Expect = 2e-12
 Identities = 35/51 (68%), Positives = 39/51 (76%)

Query: 14 SPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
          SPIIEEL+ FHDHALIIIFLIS LVLY + L L T L + S   AQE+ETV
Sbjct: 6  SPIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
           sapiens]
          Length = 415

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 32/48 (66%), Positives = 38/48 (79%)

Query: 17  IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
           + + +TFHDH L+I+FLISSLVLY ISLIL   LT+ S I AQEIETV
Sbjct: 368 LRDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415


>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 32/48 (66%), Positives = 38/48 (79%)

Query: 17  IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
           + + +TFHDH L+I+FLISSLVLY ISLIL   LT+ S I AQEIETV
Sbjct: 198 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245


>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
           sapiens]
          Length = 433

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 32/48 (66%), Positives = 38/48 (79%)

Query: 17  IEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
           + + +TFHDH L+I+FLISSLVLY ISLIL   LT+ S I AQEIETV
Sbjct: 386 LRDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433


>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 70

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 33/59 (55%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 8  GLQDAISPIIEELLTFHDHALIIIFLISSLVLYTISL---ILRTNLTHISAIHAQEIET 63
          G    +S    ELL FH H L+IIFLISSLV Y ISL   IL T LTH S +  QE+ET
Sbjct: 11 GKVQTVSSTWLELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69


>gi|52317176 olfactory receptor, family 10, subfamily K, member 2
           [Homo sapiens]
          Length = 312

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 13  ISPIIEELLTFHDH-ALIIIFLISSLVLYTISLILRTNLTHI 53
           I+P+++ L + H+H + I+IF++ +LVL    L++  +  HI
Sbjct: 181 IAPVLK-LASHHNHFSQIVIFMLCTLVLAIPLLLILVSYVHI 221


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.141    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,867,167
Number of Sequences: 37866
Number of extensions: 48171
Number of successful extensions: 159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 30
length of query: 64
length of database: 18,247,518
effective HSP length: 37
effective length of query: 27
effective length of database: 16,846,476
effective search space: 454854852
effective search space used: 454854852
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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