Search of human proteins with 239748049

Search of human proteins with 239748049

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748049 PREDICTED: similar to NADH dehydrogenase
[ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial [Homo
sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748049 PREDICTED: similar to NADH dehydrogenase [ubiquinon...   270   2e-73
gi|4758768 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1...   220   2e-58
gi|8923421 seryl-tRNA synthetase 2 isoform b precursor [Homo sap...    31   0.30 
gi|117938268 E2F-associated phosphoprotein [Homo sapiens]              28   1.5  
gi|225579074 seryl-tRNA synthetase 2 isoform a precursor [Homo s...    28   2.0  
gi|45269145 kelch-like ECH-associated protein 1 [Homo sapiens]         28   2.0  
gi|22027642 kelch-like ECH-associated protein 1 [Homo sapiens]         28   2.0  
gi|20149640 dual oxidase 1 precursor [Homo sapiens]                    28   2.6  
gi|28872751 dual oxidase 1 precursor [Homo sapiens]                    28   2.6  
gi|124028519 hypothetical protein LOC158401 isoform 2 [Homo sapi...    27   4.4  
gi|124028515 hypothetical protein LOC158401 isoform 1 [Homo sapi...    27   4.4  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           26   9.7  
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]             26   9.7  
gi|23097338 neurexophilin 1 precursor [Homo sapiens]                   26   9.7  

>gi|239748049 PREDICTED: similar to NADH dehydrogenase [ubiquinone]
           1 alpha subcomplex subunit 10, mitochondrial [Homo
           sapiens]
          Length = 128

 Score =  270 bits (690), Expect = 2e-73
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MTLADVGTLCCHPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQD 60
           MTLADVGTLCCHPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQD
Sbjct: 1   MTLADVGTLCCHPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQD 60

Query: 61  NRTLYHLRLLVQDKFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEV 120
           NRTLYHLRLLVQDKFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEV
Sbjct: 61  NRTLYHLRLLVQDKFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEV 120

Query: 121 GDKWIWLK 128
           GDKWIWLK
Sbjct: 121 GDKWIWLK 128


>gi|4758768 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10,
           42kDa precursor [Homo sapiens]
          Length = 355

 Score =  220 bits (561), Expect = 2e-58
 Identities = 104/105 (99%), Positives = 105/105 (100%)

Query: 24  KKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDKFEVLNYTSI 83
           +KCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDKFEVLNYTSI
Sbjct: 251 EKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDKFEVLNYTSI 310

Query: 84  PIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK 128
           PIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK
Sbjct: 311 PIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK 355


>gi|8923421 seryl-tRNA synthetase 2 isoform b precursor [Homo
           sapiens]
          Length = 518

 Score = 30.8 bits (68), Expect = 0.30
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 37  QDSKKVVEDIEYLKFD-KGPWLKQDNRTLYHLRLLVQDKFEVLNYTSIPIFLPEVTIGAH 95
           QDS +V +D +Y     +G  ++++   LY     ++++F +          P+V +G  
Sbjct: 124 QDSGEVQQDPKYQGLRARGREIRKELVHLYPREAQLEEQFYLQALKLPNQTHPDVPVGDE 183

Query: 96  QTDRVLHQFRELPGRKYSPGYNTEVGDK 123
              RVLH   + P   + P  + E+G+K
Sbjct: 184 SQARVLHMVGDKPVFSFQPRGHLEIGEK 211


>gi|117938268 E2F-associated phosphoprotein [Homo sapiens]
          Length = 285

 Score = 28.5 bits (62), Expect = 1.5
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 18  VPGVSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDKFEV 77
           V   S+ K EVL+Y A E +  ++V + +   + D     + D   +YH  +  +   EV
Sbjct: 207 VMNCSINKEEVLRYKASENRKKRRVHKKMRSNREDAAEKAETDVEEIYHPVMCTECSTEV 266

Query: 78  LNYTSIPIF 86
             Y    +F
Sbjct: 267 AVYDKDEVF 275


>gi|225579074 seryl-tRNA synthetase 2 isoform a precursor [Homo
           sapiens]
          Length = 520

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 88  PEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDK 123
           P+V +G     RVLH   + P   + P  + E+G+K
Sbjct: 178 PDVPVGDESQARVLHMVGDKPVFSFQPRGHLEIGEK 213


>gi|45269145 kelch-like ECH-associated protein 1 [Homo sapiens]
          Length = 624

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 11  CHPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDI 46
           CH   P    + L+KCE+LQ  +R      K+ E++
Sbjct: 273 CHSLTPNFLQMQLQKCEILQSDSRCKDYLVKIFEEL 308


>gi|22027642 kelch-like ECH-associated protein 1 [Homo sapiens]
          Length = 624

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 11  CHPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDI 46
           CH   P    + L+KCE+LQ  +R      K+ E++
Sbjct: 273 CHSLTPNFLQMQLQKCEILQSDSRCKDYLVKIFEEL 308


>gi|20149640 dual oxidase 1 precursor [Homo sapiens]
          Length = 1551

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 6   VGTLCCHPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVED 45
           +GTLCC P V  +    + +  +  +   + QD + +V +
Sbjct: 599 IGTLCCFPLVSLLSAWIVARLRMRNFKRLQGQDRQSIVSE 638


>gi|28872751 dual oxidase 1 precursor [Homo sapiens]
          Length = 1551

 Score = 27.7 bits (60), Expect = 2.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 6   VGTLCCHPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVED 45
           +GTLCC P V  +    + +  +  +   + QD + +V +
Sbjct: 599 IGTLCCFPLVSLLSAWIVARLRMRNFKRLQGQDRQSIVSE 638


>gi|124028519 hypothetical protein LOC158401 isoform 2 [Homo
           sapiens]
          Length = 1405

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 12  HPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDN------RTLY 65
           +P + TVP +        QYS  + +    V E+   +  +K  W KQ         TL 
Sbjct: 283 NPFLLTVPRIQEPHS---QYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMMETLE 339

Query: 66  HLRLLVQDKFEVLNYTSIPIFLP 88
           HL   +       N T I IFLP
Sbjct: 340 HLNTYLCHDNLSSNDTKIEIFLP 362


>gi|124028515 hypothetical protein LOC158401 isoform 1 [Homo
           sapiens]
          Length = 1444

 Score = 26.9 bits (58), Expect = 4.4
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 12  HPAVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDN------RTLY 65
           +P + TVP +        QYS  + +    V E+   +  +K  W KQ         TL 
Sbjct: 322 NPFLLTVPRIQEPHS---QYSVTDLKKIFSVKEESLVINLEKAEWWKQAGLNLKMMETLE 378

Query: 66  HLRLLVQDKFEVLNYTSIPIFLP 88
           HL   +       N T I IFLP
Sbjct: 379 HLNTYLCHDNLSSNDTKIEIFLP 401


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 13/54 (24%), Positives = 29/54 (53%)

Query: 21   VSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDK 74
            +S K+ E+ Q   +  ++ KK+ E+ E L + +    +++ +      LL+Q+K
Sbjct: 1728 LSWKEEELNQEEGKLVEEKKKLAEEEEALAWQREKLSEEETKLAQEEELLIQEK 1781


>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
          Length = 2156

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 27   EVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTL 64
            ++++   ++  DS+ + +  E +  DKG WL ++N  L
Sbjct: 1717 DIVEPGTKQNDDSRILTDIEEGVLIDKGKWLLKENHLL 1754


>gi|23097338 neurexophilin 1 precursor [Homo sapiens]
          Length = 271

 Score = 25.8 bits (55), Expect = 9.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 14  AVPTVPGVSLKKCEVLQYSAREAQDSKKVVEDIEYLKFDK 53
           +V  VP   + + ++ Q +  +A+DSK     IEY K DK
Sbjct: 164 SVSLVPPTKIVEFDLAQQTVIDAKDSKSFNCRIEYEKVDK 203


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,180,210
Number of Sequences: 37866
Number of extensions: 201043
Number of successful extensions: 469
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 457
Number of HSP's gapped (non-prelim): 14
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.