Search of human proteins with 239747667

Search of human proteins with 239747667

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747667 PREDICTED: hypothetical protein XP_002348225 [Homo
sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747667 PREDICTED: hypothetical protein XP_002348225 [Homo ...   181   8e-47
gi|23618867 sideroflexin 1 [Homo sapiens]                              31   0.18 
gi|13899299 sestrin 2 [Homo sapiens]                                   29   0.91 
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]       27   3.5  
gi|7657196 zinc finger protein 330 [Homo sapiens]                      27   4.5  
gi|24308227 zinc finger protein 687 [Homo sapiens]                     26   5.9  
gi|31621303 sideroflexin 3 [Homo sapiens]                              26   5.9  
gi|153792564 solute carrier family 47, member 2 isoform 2 [Homo ...    26   7.7  
gi|38261960 solute carrier family 47, member 2 isoform 1 [Homo s...    26   7.7  
gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens]    26   7.7  

>gi|239747667 PREDICTED: hypothetical protein XP_002348225 [Homo
          sapiens]
          Length = 86

 Score =  181 bits (460), Expect = 8e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MGVSEYIQGALVVKAFVQQSPCEVLGAFVHGCGVCRVFGDSSCCQAFVQQSPPSKAFPSS 60
          MGVSEYIQGALVVKAFVQQSPCEVLGAFVHGCGVCRVFGDSSCCQAFVQQSPPSKAFPSS
Sbjct: 1  MGVSEYIQGALVVKAFVQQSPCEVLGAFVHGCGVCRVFGDSSCCQAFVQQSPPSKAFPSS 60

Query: 61 AHPGFNKSDSTFILTTFTIFEKKCRK 86
          AHPGFNKSDSTFILTTFTIFEKKCRK
Sbjct: 61 AHPGFNKSDSTFILTTFTIFEKKCRK 86


>gi|23618867 sideroflexin 1 [Homo sapiens]
          Length = 322

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/54 (33%), Positives = 24/54 (44%)

Query: 1   MGVSEYIQGALVVKAFVQQSPCEVLGAFVHGCGVCRVFGDSSCCQAFVQQSPPS 54
           M +  +I   L  KAF+++ P       V   G C VF    CC  F Q+S  S
Sbjct: 241 MAIPPFIMNTLEKKAFLKRFPWMSAPIQVGLVGFCLVFATPLCCALFPQKSSMS 294


>gi|13899299 sestrin 2 [Homo sapiens]
          Length = 480

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 10  ALVVKAFVQQSPCEVLGAFVHGCGVCRVFGDSSCCQAFVQQSPPS-KAFPSSAHP 63
           A +++A V  + C  L +FV GCG+    GD+    A    +PPS ++ P S  P
Sbjct: 192 AELIQALVLLTHCHSLSSFVFGCGILPE-GDADGSPAPQAPTPPSEQSSPPSRDP 245


>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
          Length = 1006

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 30  HGCGVCRVFGDSSCCQAFVQQSPPSK-AFPSSAHPGFNKSDST 71
           HG    R  GDS  C  F   +PP +   PSS  PG  +S  T
Sbjct: 295 HGRPRFRETGDSEDCPPFRAGTPPQQPTAPSSEWPGPQRSPGT 337


>gi|7657196 zinc finger protein 330 [Homo sapiens]
          Length = 320

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 16  FVQQSPCEVLGAFVHGCGVCRVFGDSSC--CQA-FVQQSPPSKAF 57
           F  Q+ C+VL A    C  C   G  SC  C+A F      SK F
Sbjct: 159 FEHQASCQVLEAETFKCVSCNRLGQHSCLRCKACFCDDHTRSKVF 203


>gi|24308227 zinc finger protein 687 [Homo sapiens]
          Length = 1237

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 13/65 (20%)

Query: 9   GALVVKAFVQQSPCEVLGAFVHGCGVCRVFGDSSCCQAFVQQSPPSKAFPSSAHPGFNKS 68
           G   +K+ +Q S CEV     H C +C +        AF +  P + A   S HP F   
Sbjct: 775 GVNSIKSHIQTSHCEVF----HKCPICPM--------AF-KSGPSAHAHLYSQHPSFQTQ 821

Query: 69  DSTFI 73
            +  I
Sbjct: 822 QAKLI 826


>gi|31621303 sideroflexin 3 [Homo sapiens]
          Length = 325

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)

Query: 1   MGVSEYIQGALVVKAFVQQSPCEVLGAFVHGCGVCRVFGDSSCCQAFVQQS 51
           M +   I   L  K F+++ P       V   G C VF    CC  F Q+S
Sbjct: 244 MAIPPLIMDTLEKKDFLKRRPWLGAPLQVGLVGFCLVFATPLCCALFPQKS 294


>gi|153792564 solute carrier family 47, member 2 isoform 2 [Homo
           sapiens]
          Length = 566

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 27  AFVHGCGVCRVFGDSSCCQAFVQQSPPSKAFPSSAHPG 64
           AFV+ CGV    G SS C   + QS  S   P+  H G
Sbjct: 75  AFVNVCGVSVGVGLSSACDTLMSQSFGS---PNKKHVG 109


>gi|38261960 solute carrier family 47, member 2 isoform 1 [Homo
           sapiens]
          Length = 602

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 27  AFVHGCGVCRVFGDSSCCQAFVQQSPPSKAFPSSAHPG 64
           AFV+ CGV    G SS C   + QS  S   P+  H G
Sbjct: 75  AFVNVCGVSVGVGLSSACDTLMSQSFGS---PNKKHVG 109


>gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens]
          Length = 1090

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 41  SSCCQAFVQQSPPSKAFPSSAHPGFNKS 68
           SS    ++QQ+ P K +  +AH   NKS
Sbjct: 577 SSIYSMYLQQATPPKNYQPAAHSALNKS 604


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.136    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,525,451
Number of Sequences: 37866
Number of extensions: 135998
Number of successful extensions: 520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 12
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.