Guide to the Human Genome
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Name: LOC100290075 Sequence: fasta or formatted (86aa) NCBI GI: 239747667
Description:

PREDICTED: hypothetical protein XP_002348225

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0          6           1
 C cysteine            7.0          6           2
 D aspartate           2.3          2           1
 E glutamate           3.5          3           1
 F phenylalanine      10.5          9           1
 G glycine             8.1          7           1
 H histidine           2.3          2           1
 I isoleucine          3.5          3           1
 K lysine              7.0          6           2
 L leucine             3.5          3           1
 M methionine          1.2          1           1
 N asparagine          1.2          1           1
 P proline             5.8          5           2
 Q glutamine           7.0          6           2
 R arginine            2.3          2           1
 S serine             11.6         10           2
 T threonine           4.7          4           2
 V valine             10.5          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348225 
SFXN1                 0.038   sideroflexin 1 
SESN2                 0.026   sestrin 2 
ANKRD33B              0.013   PREDICTED: ankyrin repeat domain 33B 
ZNF330                0.013   zinc finger protein 330 
ZNF687                0.006   zinc finger protein 687 
SFXN3                 0.006   sideroflexin 3 
SLC47A2               0.006   solute carrier family 47, member 2 isoform 2 
SLC47A2               0.006   solute carrier family 47, member 2 isoform 1 
PPP1R13B              0.006   apoptosis-stimulating protein of p53, 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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