Search of human proteins with 239747538

Search of human proteins with 239747538

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747538 PREDICTED: similar to eukaryotic translation
initiation factor 1 [Homo sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753006 PREDICTED: similar to eukaryotic translation initia...   279   4e-76
gi|239747538 PREDICTED: similar to eukaryotic translation initia...   279   4e-76
gi|239741414 PREDICTED: similar to eukaryotic translation initia...   279   4e-76
gi|5032133 eukaryotic translation initiation factor 1 [Homo sapi...   208   1e-54
gi|5031711 translation factor sui1 homolog [Homo sapiens]             196   6e-51
gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens]       27   3.9  
gi|7657176 canopy 2 homolog [Homo sapiens]                             27   5.1  
gi|108860697 zinc finger protein 592 [Homo sapiens]                    27   6.7  
gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member...    26   8.8  
gi|18765715 major histocompatibility complex, class II, DM alpha...    26   8.8  

>gi|239753006 PREDICTED: similar to eukaryotic translation
           initiation factor 1 [Homo sapiens]
          Length = 136

 Score =  279 bits (714), Expect = 4e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ 60
           MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ
Sbjct: 1   MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ 60

Query: 61  QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL 120
           QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL
Sbjct: 61  QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL 120

Query: 121 VELGLAKDDQLKVHVF 136
           VELGLAKDDQLKVHVF
Sbjct: 121 VELGLAKDDQLKVHVF 136


>gi|239747538 PREDICTED: similar to eukaryotic translation
           initiation factor 1 [Homo sapiens]
          Length = 136

 Score =  279 bits (714), Expect = 4e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ 60
           MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ
Sbjct: 1   MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ 60

Query: 61  QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL 120
           QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL
Sbjct: 61  QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL 120

Query: 121 VELGLAKDDQLKVHVF 136
           VELGLAKDDQLKVHVF
Sbjct: 121 VELGLAKDDQLKVHVF 136


>gi|239741414 PREDICTED: similar to eukaryotic translation
           initiation factor 1 [Homo sapiens]
          Length = 136

 Score =  279 bits (714), Expect = 4e-76
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ 60
           MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ
Sbjct: 1   MSVLLKEYKILKTAVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQ 60

Query: 61  QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL 120
           QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL
Sbjct: 61  QRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNNICQFL 120

Query: 121 VELGLAKDDQLKVHVF 136
           VELGLAKDDQLKVHVF
Sbjct: 121 VELGLAKDDQLKVHVF 136


>gi|5032133 eukaryotic translation initiation factor 1 [Homo
           sapiens]
          Length = 113

 Score =  208 bits (530), Expect = 1e-54
 Identities = 104/111 (93%), Positives = 105/111 (94%), Gaps = 1/111 (0%)

Query: 27  AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 86
           AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA
Sbjct: 3   AIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKA 62

Query: 87  F-KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136
           F K FACNGTVIEHPEYGEVIQ QGDQ  NICQFLVE+GLAKDDQLKVH F
Sbjct: 63  FKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113


>gi|5031711 translation factor sui1 homolog [Homo sapiens]
          Length = 113

 Score =  196 bits (497), Expect = 6e-51
 Identities = 96/110 (87%), Positives = 102/110 (92%), Gaps = 1/110 (0%)

Query: 28  IQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 87
           IQNL SFDPFADA+KGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF
Sbjct: 4   IQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAF 63

Query: 88  -KNFACNGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVHVF 136
            K FACNGTVIEHPEYGEVIQ QGDQ  NICQFL+E+G+ K++QLKVH F
Sbjct: 64  KKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113


>gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens]
          Length = 663

 Score = 27.3 bits (59), Expect = 3.9
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 33  SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKNFAC 92
           SF P  D      LL +    Y   + QQ  G       +GI     KKK  +  KN   
Sbjct: 477 SFVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGI-----KKKKQQKIKNILS 531

Query: 93  NGTVIEHPEYGEVIQPQGDQCNNICQFLV--ELGLAKDDQLKV 133
           N T+ EH  + E       +C +  + L+  ELGLA+ D + +
Sbjct: 532 NKTLREHNSFVE-------RCIDWNRELLKRELGLAESDIIDI 567


>gi|7657176 canopy 2 homolog [Homo sapiens]
          Length = 182

 Score = 26.9 bits (58), Expect = 5.1
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 56  HIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGDQCNN 115
           ++R+  RNG  +   +QGI  D D    +K    FAC   V E+ +  E+I+    + +N
Sbjct: 105 YVRVVGRNGESSELDLQGIRIDSDISGTLK----FACESIVEEYED--ELIEFFSREADN 158

Query: 116 I 116
           +
Sbjct: 159 V 159


>gi|108860697 zinc finger protein 592 [Homo sapiens]
          Length = 1267

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 14  AVSTEEKESYCKFAIQNLHSFDPFADASKGDDLLPAGTE 52
           AV     E+  KF +  LH FD F       + LP G++
Sbjct: 177 AVGGPVLEALAKFPVPELHMFDHFCKKEPKPEPLPLGSQ 215


>gi|4557481 ATP-binding cassette, sub-family C (CFTR/MRP), member 2
           [Homo sapiens]
          Length = 1545

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 93  NGTVIEHPEYGEVIQPQGDQCNNICQFLVELGLAKDDQLKVH 134
           NGT++E   Y  ++  +G+   N+  FL   G   +++  VH
Sbjct: 836 NGTIVEKGSYSALLAKKGEFAKNLKTFLRHTG--PEEEATVH 875


>gi|18765715 major histocompatibility complex, class II, DM alpha
           precursor [Homo sapiens]
          Length = 261

 Score = 26.2 bits (56), Expect = 8.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 73  GIADDYDKKKLVKAFKNFACNGTVIEHPEYGEVIQPQGD 111
           G+++ YD+ +L   F +F+ N  V   PE+ +  Q QGD
Sbjct: 58  GLSEAYDEDQLF--FFDFSQNTRVPRLPEFADWAQEQGD 94


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,044,967
Number of Sequences: 37866
Number of extensions: 205881
Number of successful extensions: 403
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 10
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.