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Search of human proteins with 239747494
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747494 PREDICTED: hypothetical protein XP_002347536 [Homo
sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752925 PREDICTED: hypothetical protein [Homo sapiens] 353 4e-98
gi|239747494 PREDICTED: hypothetical protein XP_002347536 [Homo ... 353 4e-98
gi|239741368 PREDICTED: hypothetical protein XP_002342205 [Homo ... 353 4e-98
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 68 4e-12
gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo ... 66 1e-11
gi|154937346 coiled-coil domain containing 129 [Homo sapiens] 33 0.11
gi|4507435 telethonin [Homo sapiens] 29 2.1
gi|58331253 obscurin, cytoskeletal calmodulin and titin-interact... 28 3.6
gi|15718680 IL2-inducible T-cell kinase [Homo sapiens] 28 4.6
gi|18254456 testis-specific gene A2 [Homo sapiens] 27 6.1
gi|134031945 SCO-spondin [Homo sapiens] 27 7.9
gi|21359867 cytochrome c-1 [Homo sapiens] 27 7.9
>gi|239752925 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 353 bits (906), Expect = 4e-98
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG
Sbjct: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
Query: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA 120
FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA
Sbjct: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA 120
Query: 121 PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH
Sbjct: 121 PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
>gi|239747494 PREDICTED: hypothetical protein XP_002347536 [Homo
sapiens]
Length = 164
Score = 353 bits (906), Expect = 4e-98
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG
Sbjct: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
Query: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA 120
FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA
Sbjct: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA 120
Query: 121 PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH
Sbjct: 121 PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
>gi|239741368 PREDICTED: hypothetical protein XP_002342205 [Homo
sapiens]
Length = 164
Score = 353 bits (906), Expect = 4e-98
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG
Sbjct: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
Query: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA 120
FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA
Sbjct: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVA 120
Query: 121 PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH
Sbjct: 121 PLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 67.8 bits (164), Expect = 4e-12
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 15/179 (8%)
Query: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
++AE L PLLGP +L +G E D L + + Q L E IA+G L
Sbjct: 273 VVAEQQRLRPLLGPRHLGHDGANHEGVDDAAHDGLDHHSDDCQRALLCHAPEPIADGRLR 332
Query: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQ---------------QVPMCHSYQIPHHAKEE 105
E+EG+ E VH++ G RG QV + S A++E
Sbjct: 333 LHREQEGTQEAVHVHDAGLGGHRGCSATTRRRAPRRRHPWAGLQVTVEESDTPEEEAEKE 392
Query: 106 PCACKGRREEQKLVAPLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
P +GR E+ + VAP V+ G V V LV V HVA + ++ + P H
Sbjct: 393 PGDKEGRGEDHEHVAPARVHAGGEDVRHVALRLVAQVGEVHVALAVLLDEAVAALPPGH 451
>gi|239757714 PREDICTED: hypothetical protein XP_002345529 [Homo
sapiens]
Length = 764
Score = 66.2 bits (160), Expect = 1e-11
Identities = 52/179 (29%), Positives = 74/179 (41%), Gaps = 15/179 (8%)
Query: 1 MLAETNGLSPLLGPGNLRQEGTCDEDFQDGGEHQLGNKKHNGQWTFLTDVAEAIANGGLG 60
++AE L PLLGP +L +G E D L + + Q L E IA+G L
Sbjct: 273 VVAEQQRLRPLLGPRHLGHDGANHEGVDDAAHDGLDHHSDDCQRALLCHAPEPIADGRLR 332
Query: 61 FKGEEEGSSECVHLYHTGGVVGRGVQLQ---------------QVPMCHSYQIPHHAKEE 105
E+EG+ E VH++ G RG QV + A++E
Sbjct: 333 LHREQEGTQEAVHVHDAGLGGHRGCSATTRRRAPRRRHPWAGLQVTVEEGDTPEEEAEKE 392
Query: 106 PCACKGRREEQKLVAPLHVNEGCPQVLEVEEALVGNVLHSHVAATIFCQDSPPSYPWAH 164
P +GR E+ + VAP V+ G V V LV V HVA + ++ + P H
Sbjct: 393 PGDKEGRGEDHEHVAPARVHAGGEDVRHVALRLVAQVGEVHVALAVLLDEAVAALPPGH 451
>gi|154937346 coiled-coil domain containing 129 [Homo sapiens]
Length = 1044
Score = 33.1 bits (74), Expect = 0.11
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 64 EEEGSSECVHLYHTGGVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVAPLH 123
EEE S C H H+ VP S IP H++ P A + +KL+ LH
Sbjct: 619 EEESSGFCPHTNHS----------LLVPESSSQCIPKHSEITPYATDLAQTSEKLIPHLH 668
Query: 124 VNEGCPQVLEVEEALVGNVL 143
G P ++ +G +L
Sbjct: 669 KLPGDPAQVKSRSGTLGQIL 688
>gi|4507435 telethonin [Homo sapiens]
Length = 167
Score = 28.9 bits (63), Expect = 2.1
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 79 GVVGRGVQLQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVAPLHVNEGCPQVLEVEEAL 138
G++GRG+Q Q+P +P + A K RE+ P+ + E +L +E AL
Sbjct: 72 GILGRGLQEYQLPYQRVLPLPIFTPAKMGATKEERED----TPIQLQE----LLALETAL 123
Query: 139 VGNVLHSHVAATIFCQDSPPSYP 161
G + A I + PP P
Sbjct: 124 GGQCVDRQEVAEI-TKQLPPVVP 145
>gi|58331253 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform a [Homo sapiens]
Length = 6620
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 18/67 (26%)
Query: 13 GPGNLRQEGTCDEDFQDGGE-------------HQLGNK-----KHNGQWTFLTDVAEAI 54
G G+L +EGT +E ++ GE H LG++ HNG+ L D+ + +
Sbjct: 6414 GMGSLEEEGTMEEAGEEEGEDGDAFVTEESQDTHSLGDRDPKILTHNGRMLTLADLEDYV 6473
Query: 55 ANGGLGF 61
G F
Sbjct: 6474 PGEGETF 6480
>gi|15718680 IL2-inducible T-cell kinase [Homo sapiens]
Length = 620
Score = 27.7 bits (60), Expect = 4.6
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 13/127 (10%)
Query: 28 QDGGEHQLGNKKHNGQWTFLTDVA-EAIANGGLGFKGEEEGSSECVHLYHTGGVVGRGVQ 86
Q+ G Q G H G W VA + I G + + E + + L H V GV
Sbjct: 367 QEIGSGQFG-LVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVC 425
Query: 87 LQQVPMCHSYQIPHHAKEEPCACKGRREEQKLVAPLHVNEGCPQVLE----VEEALVGNV 142
L+Q P+C ++ H C R ++ L A + C V E +EEA V
Sbjct: 426 LEQAPICLVFEFMEHG----CLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---V 478
Query: 143 LHSHVAA 149
+H +AA
Sbjct: 479 IHRDLAA 485
>gi|18254456 testis-specific gene A2 [Homo sapiens]
Length = 309
Score = 27.3 bits (59), Expect = 6.1
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 6 NGLSPLLGPGNLRQEGTCDEDFQDGGE--HQLGNKKHNGQW---------TFLTDVAEAI 54
+G + P R EG D + G + + N + G+W T+L AE
Sbjct: 77 HGQGTFIYPDGSRYEGEWANDLRHGHGVYYYINNDTYTGEWFAHQRHGQGTYL--YAETG 134
Query: 55 ANG-GLGFKGEEEGSSECVHLYH 76
+ G G++EG++E +HL H
Sbjct: 135 SKYVGTWVNGQQEGTAELIHLNH 157
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 26.9 bits (58), Expect = 7.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 102 AKEEPCACKGRREEQKLVAPLHVNEGCPQVLEV 134
+K C G R + +L P+ GCP +EV
Sbjct: 4036 SKNGGAPCAGERHQARLCNPMPCEAGCPAGMEV 4068
>gi|21359867 cytochrome c-1 [Homo sapiens]
Length = 325
Score = 26.9 bits (58), Expect = 7.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 143 LHSHVAATIFCQDSPPSYPWAH 164
LHS V+A+ + PPSYPW+H
Sbjct: 78 LHSAVSASDL-ELHPPSYPWSH 98
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,553,294
Number of Sequences: 37866
Number of extensions: 360287
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 13
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.