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Search of human proteins with 239747402
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
sapiens]
(53 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ... 106 3e-24
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ... 106 3e-24
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ... 106 3e-24
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ... 79 1e-15
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ... 79 1e-15
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ... 79 1e-15
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ... 78 2e-15
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ... 78 2e-15
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ... 78 2e-15
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ... 77 2e-15
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ... 77 2e-15
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ... 77 2e-15
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ... 77 3e-15
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ... 77 3e-15
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ... 77 3e-15
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ... 76 6e-15
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ... 76 6e-15
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ... 76 6e-15
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ... 70 4e-13
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens] 70 5e-13
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ... 70 5e-13
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ... 66 5e-12
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ... 66 5e-12
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ... 66 5e-12
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens] 65 1e-11
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens] 64 2e-11
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ... 64 2e-11
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ... 64 2e-11
gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand... 64 3e-11
gi|52317176 olfactory receptor, family 10, subfamily K, member 2... 26 5.9
>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
sapiens]
Length = 53
Score = 106 bits (265), Expect = 3e-24
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV
Sbjct: 1 MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
sapiens]
Length = 53
Score = 106 bits (265), Expect = 3e-24
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV
Sbjct: 1 MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
sapiens]
Length = 53
Score = 106 bits (265), Expect = 3e-24
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV
Sbjct: 1 MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 78.6 bits (192), Expect = 1e-15
Identities = 42/50 (84%), Positives = 43/50 (86%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LLTFHDHALIIIFLISSLVL IISLILTTKLTHT T AQEIETV
Sbjct: 15 PIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
sapiens]
Length = 64
Score = 78.6 bits (192), Expect = 1e-15
Identities = 42/50 (84%), Positives = 43/50 (86%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LLTFHDHALIIIFLISSLVL IISLILTTKLTHT T AQEIETV
Sbjct: 15 PIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
sapiens]
Length = 64
Score = 78.6 bits (192), Expect = 1e-15
Identities = 42/50 (84%), Positives = 43/50 (86%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LLTFHDHALIIIFLISSLVL IISLILTTKLTHT T AQEIETV
Sbjct: 15 PIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64
>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 77.8 bits (190), Expect = 2e-15
Identities = 40/50 (80%), Positives = 42/50 (84%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LL FHDH LIIIFLISSLVLYIISLILTTKL HTST AQE+ETV
Sbjct: 15 PIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
sapiens]
Length = 64
Score = 77.8 bits (190), Expect = 2e-15
Identities = 40/50 (80%), Positives = 42/50 (84%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LL FHDH LIIIFLISSLVLYIISLILTTKL HTST AQE+ETV
Sbjct: 15 PIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
sapiens]
Length = 64
Score = 77.8 bits (190), Expect = 2e-15
Identities = 40/50 (80%), Positives = 42/50 (84%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LL FHDH LIIIFLISSLVLYIISLILTTKL HTST AQE+ETV
Sbjct: 15 PIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64
>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 64
Score = 77.4 bits (189), Expect = 2e-15
Identities = 40/52 (76%), Positives = 42/52 (80%)
Query: 2 LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
+ P +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S HAQEIETV
Sbjct: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
sapiens]
Length = 64
Score = 77.4 bits (189), Expect = 2e-15
Identities = 40/52 (76%), Positives = 42/52 (80%)
Query: 2 LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
+ P +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S HAQEIETV
Sbjct: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
sapiens]
Length = 64
Score = 77.4 bits (189), Expect = 2e-15
Identities = 40/52 (76%), Positives = 42/52 (80%)
Query: 2 LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
+ P +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S HAQEIETV
Sbjct: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64
>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST AQEI+TV
Sbjct: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
sapiens]
Length = 64
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST AQEI+TV
Sbjct: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
sapiens]
Length = 64
Score = 77.0 bits (188), Expect = 3e-15
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST AQEI+TV
Sbjct: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64
>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 75.9 bits (185), Expect = 6e-15
Identities = 39/46 (84%), Positives = 41/46 (89%)
Query: 8 KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
+LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST AQEI+TV
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 75.9 bits (185), Expect = 6e-15
Identities = 39/46 (84%), Positives = 41/46 (89%)
Query: 8 KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
+LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST AQEI+TV
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
sapiens]
Length = 64
Score = 75.9 bits (185), Expect = 6e-15
Identities = 39/46 (84%), Positives = 41/46 (89%)
Query: 8 KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
+LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST AQEI+TV
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64
>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
sapiens]
Length = 415
Score = 70.1 bits (170), Expect = 4e-13
Identities = 35/47 (74%), Positives = 40/47 (85%)
Query: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV
Sbjct: 369 RDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415
>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 69.7 bits (169), Expect = 5e-13
Identities = 35/47 (74%), Positives = 40/47 (85%)
Query: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV
Sbjct: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245
>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
sapiens]
Length = 433
Score = 69.7 bits (169), Expect = 5e-13
Identities = 35/47 (74%), Positives = 40/47 (85%)
Query: 7 RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
R +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST AQEIETV
Sbjct: 387 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433
>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit
II [Homo sapiens]
Length = 63
Score = 66.2 bits (160), Expect = 5e-12
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS AQE+ETV
Sbjct: 7 PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
sapiens]
Length = 63
Score = 66.2 bits (160), Expect = 5e-12
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS AQE+ETV
Sbjct: 7 PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
sapiens]
Length = 63
Score = 66.2 bits (160), Expect = 5e-12
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS AQE+ETV
Sbjct: 7 PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56
>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
Length = 227
Score = 64.7 bits (156), Expect = 1e-11
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +L+TFHDHAL+IIFLI LVLY + L LTTKLT+T+ AQE+ETV
Sbjct: 15 PIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQEMETV 64
>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 64.3 bits (155), Expect = 2e-11
Identities = 35/48 (72%), Positives = 38/48 (79%), Gaps = 3/48 (6%)
Query: 8 KLLTFHDHALIIIFLISSLVLYIISL---ILTTKLTHTSTKHAQEIET 52
+LL FH H L+IIFLISSLV YIISL ILTTKLTHTST QE+ET
Sbjct: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69
>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
[Homo sapiens]
Length = 64
Score = 64.3 bits (155), Expect = 2e-11
Identities = 33/50 (66%), Positives = 37/50 (74%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +L+ FHDHALIIIFLI LVLY + L LTTKLT+TS QEIETV
Sbjct: 15 PIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64
>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
sapiens]
Length = 64
Score = 64.3 bits (155), Expect = 2e-11
Identities = 33/50 (66%), Positives = 37/50 (74%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +L+ FHDHALIIIFLI LVLY + L LTTKLT+TS QEIETV
Sbjct: 15 PIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64
>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
neanderthalensis]
Length = 227
Score = 63.5 bits (153), Expect = 3e-11
Identities = 32/50 (64%), Positives = 38/50 (76%)
Query: 4 PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
P +L+ FHDHAL+IIFLI LVLY + L LTTKLT+TS AQE+ETV
Sbjct: 15 PIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64
>gi|52317176 olfactory receptor, family 10, subfamily K, member 2
[Homo sapiens]
Length = 312
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 8 KLLTFHDH-ALIIIFLISSLVLYIISLILTTKLTH 41
KL + H+H + I+IF++ +LVL I L++ H
Sbjct: 186 KLASHHNHFSQIVIFMLCTLVLAIPLLLILVSYVH 220
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.331 0.141 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,573,367
Number of Sequences: 37866
Number of extensions: 34290
Number of successful extensions: 139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 30
length of query: 53
length of database: 18,247,518
effective HSP length: 27
effective length of query: 26
effective length of database: 17,225,136
effective search space: 447853536
effective search space used: 447853536
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.