Guide to the Human Genome
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Search of human proteins with 239747402

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
sapiens]
         (53 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo ...   106   3e-24
gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo ...   106   3e-24
gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo ...   106   3e-24
gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit ...    79   1e-15
gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo ...    79   1e-15
gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo ...    79   1e-15
gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit ...    78   2e-15
gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo ...    78   2e-15
gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo ...    78   2e-15
gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit ...    77   2e-15
gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo ...    77   2e-15
gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo ...    77   2e-15
gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit ...    77   3e-15
gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo ...    77   3e-15
gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo ...    77   3e-15
gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit ...    76   6e-15
gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit ...    76   6e-15
gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo ...    76   6e-15
gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo ...    70   4e-13
gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]            70   5e-13
gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo ...    70   5e-13
gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit ...    66   5e-12
gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo ...    66   5e-12
gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo ...    66   5e-12
gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]            65   1e-11
gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]            64   2e-11
gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit ...    64   2e-11
gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo ...    64   2e-11
gi|196123582 cytochrome c oxidase subunit II [Homo sapiens neand...    64   3e-11
gi|52317176 olfactory receptor, family 10, subfamily K, member 2...    26   5.9  

>gi|239752847 PREDICTED: hypothetical protein XP_002345402 [Homo
          sapiens]
          Length = 53

 Score =  106 bits (265), Expect = 3e-24
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV
Sbjct: 1  MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239747402 PREDICTED: hypothetical protein XP_002346644 [Homo
          sapiens]
          Length = 53

 Score =  106 bits (265), Expect = 3e-24
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV
Sbjct: 1  MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239741228 PREDICTED: hypothetical protein XP_002342139 [Homo
          sapiens]
          Length = 53

 Score =  106 bits (265), Expect = 3e-24
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV
Sbjct: 1  MLHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53


>gi|239753397 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 42/50 (84%), Positives = 43/50 (86%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LLTFHDHALIIIFLISSLVL IISLILTTKLTHT T  AQEIETV
Sbjct: 15 PIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64


>gi|239747968 PREDICTED: hypothetical protein XP_002346519 [Homo
          sapiens]
          Length = 64

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 42/50 (84%), Positives = 43/50 (86%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LLTFHDHALIIIFLISSLVL IISLILTTKLTHT T  AQEIETV
Sbjct: 15 PIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64


>gi|239741863 PREDICTED: hypothetical protein XP_002342327 [Homo
          sapiens]
          Length = 64

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 42/50 (84%), Positives = 43/50 (86%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LLTFHDHALIIIFLISSLVL IISLILTTKLTHT T  AQEIETV
Sbjct: 15 PIIEELLTFHDHALIIIFLISSLVLDIISLILTTKLTHTGTIDAQEIETV 64


>gi|239755319 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 64

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 40/50 (80%), Positives = 42/50 (84%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LL FHDH LIIIFLISSLVLYIISLILTTKL HTST  AQE+ETV
Sbjct: 15 PIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64


>gi|239749812 PREDICTED: hypothetical protein XP_002347169 [Homo
          sapiens]
          Length = 64

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 40/50 (80%), Positives = 42/50 (84%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LL FHDH LIIIFLISSLVLYIISLILTTKL HTST  AQE+ETV
Sbjct: 15 PIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64


>gi|239744102 PREDICTED: hypothetical protein XP_002343062 [Homo
          sapiens]
          Length = 64

 Score = 77.8 bits (190), Expect = 2e-15
 Identities = 40/50 (80%), Positives = 42/50 (84%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LL FHDH LIIIFLISSLVLYIISLILTTKL HTST  AQE+ETV
Sbjct: 15 PIIEELLHFHDHTLIIIFLISSLVLYIISLILTTKLMHTSTTDAQEVETV 64


>gi|239754143 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 64

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query: 2  LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          + P   +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S  HAQEIETV
Sbjct: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64


>gi|239748610 PREDICTED: hypothetical protein XP_002346731 [Homo
          sapiens]
          Length = 64

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query: 2  LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          + P   +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S  HAQEIETV
Sbjct: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64


>gi|239742628 PREDICTED: hypothetical protein XP_002342599 [Homo
          sapiens]
          Length = 64

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query: 2  LHPYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          + P   +LLTFHDHALIIIFLISSLVLY ISLIL T LTH S  HAQEIETV
Sbjct: 13 ISPIIEELLTFHDHALIIIFLISSLVLYTISLILRTNLTHISAIHAQEIETV 64


>gi|239755520 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 77.0 bits (188), Expect = 3e-15
 Identities = 40/50 (80%), Positives = 43/50 (86%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST  AQEI+TV
Sbjct: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64


>gi|239750010 PREDICTED: hypothetical protein XP_002347252 [Homo
          sapiens]
          Length = 64

 Score = 77.0 bits (188), Expect = 3e-15
 Identities = 40/50 (80%), Positives = 43/50 (86%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST  AQEI+TV
Sbjct: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64


>gi|239744323 PREDICTED: hypothetical protein XP_002343117 [Homo
          sapiens]
          Length = 64

 Score = 77.0 bits (188), Expect = 3e-15
 Identities = 40/50 (80%), Positives = 43/50 (86%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +LLTFH HALIII LISSLVLY+ISLILTTKLTHTST  AQEI+TV
Sbjct: 15 PIIEELLTFHGHALIIILLISSLVLYVISLILTTKLTHTSTIDAQEIKTV 64


>gi|239753932 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 75.9 bits (185), Expect = 6e-15
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 8  KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          +LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST  AQEI+TV
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64


>gi|239748474 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 75.9 bits (185), Expect = 6e-15
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 8  KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          +LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST  AQEI+TV
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64


>gi|239742438 PREDICTED: hypothetical protein XP_002342515 [Homo
          sapiens]
          Length = 64

 Score = 75.9 bits (185), Expect = 6e-15
 Identities = 39/46 (84%), Positives = 41/46 (89%)

Query: 8  KLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          +LLTFHDH LIIIFLIS LVLYIISLI TTKLTHTST  AQEI+TV
Sbjct: 19 ELLTFHDHTLIIIFLISPLVLYIISLIFTTKLTHTSTIDAQEIQTV 64


>gi|239753310 PREDICTED: hypothetical protein XP_002345618 [Homo
           sapiens]
          Length = 415

 Score = 70.1 bits (170), Expect = 4e-13
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 7   RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
           R  +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST  AQEIETV
Sbjct: 369 RDEITFHDHTLVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 415


>gi|239747883 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 7   RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
           R  +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST  AQEIETV
Sbjct: 199 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 245


>gi|239741764 PREDICTED: hypothetical protein XP_002342289 [Homo
           sapiens]
          Length = 433

 Score = 69.7 bits (169), Expect = 5e-13
 Identities = 35/47 (74%), Positives = 40/47 (85%)

Query: 7   RKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
           R  +TFHDH L+I+FLISSLVLY+ISLILT KLT+ ST  AQEIETV
Sbjct: 387 RDEITFHDHILVIVFLISSLVLYVISLILTIKLTNNSTIDAQEIETV 433


>gi|239753950 PREDICTED: similar to cytochrome c oxidase subunit
          II [Homo sapiens]
          Length = 63

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 33/50 (66%), Positives = 39/50 (78%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS   AQE+ETV
Sbjct: 7  PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239748490 PREDICTED: hypothetical protein XP_002346674 [Homo
          sapiens]
          Length = 63

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 33/50 (66%), Positives = 39/50 (78%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS   AQE+ETV
Sbjct: 7  PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|239742454 PREDICTED: hypothetical protein XP_002342519 [Homo
          sapiens]
          Length = 63

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 33/50 (66%), Positives = 39/50 (78%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +L+ FHDHALIIIFLIS LVLY++ L LTTKL +TS   AQE+ETV
Sbjct: 7  PIIEELIAFHDHALIIIFLISFLVLYVLFLTLTTKLANTSITDAQEMETV 56


>gi|251831110 cytochrome c oxidase subunit II [Homo sapiens]
          Length = 227

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +L+TFHDHAL+IIFLI  LVLY + L LTTKLT+T+   AQE+ETV
Sbjct: 15 PIMEELITFHDHALMIIFLICFLVLYALFLTLTTKLTNTNISDAQEMETV 64


>gi|239757854 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 70

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 35/48 (72%), Positives = 38/48 (79%), Gaps = 3/48 (6%)

Query: 8  KLLTFHDHALIIIFLISSLVLYIISL---ILTTKLTHTSTKHAQEIET 52
          +LL FH H L+IIFLISSLV YIISL   ILTTKLTHTST   QE+ET
Sbjct: 22 ELLHFHSHTLMIIFLISSLVFYIISLILTILTTKLTHTSTVDVQEVET 69


>gi|239754134 PREDICTED: similar to Cytochrome c oxidase subunit 2
          [Homo sapiens]
          Length = 64

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 33/50 (66%), Positives = 37/50 (74%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +L+ FHDHALIIIFLI  LVLY + L LTTKLT+TS    QEIETV
Sbjct: 15 PIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64


>gi|239742635 PREDICTED: hypothetical protein XP_002342601 [Homo
          sapiens]
          Length = 64

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 33/50 (66%), Positives = 37/50 (74%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +L+ FHDHALIIIFLI  LVLY + L LTTKLT+TS    QEIETV
Sbjct: 15 PIIEELIIFHDHALIIIFLICFLVLYALFLTLTTKLTNTSISDVQEIETV 64


>gi|196123582 cytochrome c oxidase subunit II [Homo sapiens
          neanderthalensis]
          Length = 227

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 32/50 (64%), Positives = 38/50 (76%)

Query: 4  PYYRKLLTFHDHALIIIFLISSLVLYIISLILTTKLTHTSTKHAQEIETV 53
          P   +L+ FHDHAL+IIFLI  LVLY + L LTTKLT+TS   AQE+ETV
Sbjct: 15 PIMEELIIFHDHALMIIFLICFLVLYALFLTLTTKLTNTSISDAQEMETV 64


>gi|52317176 olfactory receptor, family 10, subfamily K, member 2
           [Homo sapiens]
          Length = 312

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 8   KLLTFHDH-ALIIIFLISSLVLYIISLILTTKLTH 41
           KL + H+H + I+IF++ +LVL I  L++     H
Sbjct: 186 KLASHHNHFSQIVIFMLCTLVLAIPLLLILVSYVH 220


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.141    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,573,367
Number of Sequences: 37866
Number of extensions: 34290
Number of successful extensions: 139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 30
length of query: 53
length of database: 18,247,518
effective HSP length: 27
effective length of query: 26
effective length of database: 17,225,136
effective search space: 447853536
effective search space used: 447853536
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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