Search of human proteins with 239746179

Search of human proteins with 239746179

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746179 PREDICTED: hypothetical protein XP_002343669 [Homo
sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757165 PREDICTED: hypothetical protein XP_002345191 [Homo ...   213   3e-56
gi|239751675 PREDICTED: hypothetical protein [Homo sapiens]           213   3e-56
gi|239746179 PREDICTED: hypothetical protein XP_002343669 [Homo ...   213   3e-56
gi|9966877 golgi associated PDZ and coiled-coil motif containing...    28   2.0  
gi|62868213 golgi associated PDZ and coiled-coil motif containin...    28   2.0  
gi|149192871 OTU domain containing 3 [Homo sapiens]                    27   2.6  
gi|9966881 nucleoporin 107kDa [Homo sapiens]                           27   4.5  
gi|222418633 family with sequence similarity 71, member B [Homo ...    26   5.9  
gi|169163903 PREDICTED: hypothetical protein [Homo sapiens]            26   5.9  
gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo ...    26   5.9  
gi|4504487 histidine rich calcium binding protein precursor [Hom...    26   5.9  
gi|153085395 histone deacetylase 4 [Homo sapiens]                      26   7.7  

>gi|239757165 PREDICTED: hypothetical protein XP_002345191 [Homo
           sapiens]
          Length = 103

 Score =  213 bits (541), Expect = 3e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED 60
           MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED
Sbjct: 1   MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED 60

Query: 61  HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH 103
           HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH
Sbjct: 61  HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH 103


>gi|239751675 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 103

 Score =  213 bits (541), Expect = 3e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED 60
           MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED
Sbjct: 1   MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED 60

Query: 61  HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH 103
           HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH
Sbjct: 61  HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH 103


>gi|239746179 PREDICTED: hypothetical protein XP_002343669 [Homo
           sapiens]
          Length = 103

 Score =  213 bits (541), Expect = 3e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED 60
           MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED
Sbjct: 1   MSSISRIFPAIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHRED 60

Query: 61  HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH 103
           HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH
Sbjct: 61  HEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSVLH 103


>gi|9966877 golgi associated PDZ and coiled-coil motif containing
           isoform a [Homo sapiens]
          Length = 462

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 58  REDHEAQGVDAIGGARHGYSLL 79
           +EDHE  G+   GG  HG  +L
Sbjct: 293 KEDHEGLGISITGGKEHGVPIL 314


>gi|62868213 golgi associated PDZ and coiled-coil motif containing
           isoform b [Homo sapiens]
          Length = 454

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 58  REDHEAQGVDAIGGARHGYSLL 79
           +EDHE  G+   GG  HG  +L
Sbjct: 285 KEDHEGLGISITGGKEHGVPIL 306


>gi|149192871 OTU domain containing 3 [Homo sapiens]
          Length = 398

 Score = 27.3 bits (59), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 36 VEEVPEDSALVFHATNDQPKGHREDH 61
          + EVP D   +F A  DQ +GH  +H
Sbjct: 67 LREVPGDGNCLFRALGDQLEGHSRNH 92


>gi|9966881 nucleoporin 107kDa [Homo sapiens]
          Length = 925

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 10  AIRNRMPTGAYLYNDAHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHREDHEAQGVD 67
           AIR  +   AYL  +AH+  N   + +  VP+  AL+   T  +   H    +   +D
Sbjct: 743 AIREHLCIRAYL--EAHETFNEWFKHMNSVPQKPALIPQPTFTEKVAHEHKEKKYEMD 798


>gi|222418633 family with sequence similarity 71, member B [Homo
           sapiens]
          Length = 605

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 48  HATNDQPKGHREDHEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAG 99
           H +    K  R+D + +G   + G RHG S   + H    T+  S   QE G
Sbjct: 467 HRSASGHKNTRDDKKEKGYSNVRGKRHGSSRKSSTH--SSTKKESRTTQELG 516


>gi|169163903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 42  DSALVFHATNDQPKGHREDHEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSV 101
           D+A+V H  +DQPKG   D E        G+     ++      +   GP  +F  AG+V
Sbjct: 15  DAAIVEHLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFW-AGTV 73


>gi|239747712 PREDICTED: hypothetical protein XP_002348233 [Homo
           sapiens]
          Length = 113

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 42  DSALVFHATNDQPKGHREDHEAQGVDAIGGARHGYSLLKAQHLLQGTQGPSDIFQEAGSV 101
           D+A+V H  +DQPKG   D E        G+     ++      +   GP  +F  AG+V
Sbjct: 15  DAAIVEHLLDDQPKGEGGDVEHVQQRGFAGSHFVSMVIPKAWKKEVFSGPRPVFW-AGTV 73


>gi|4504487 histidine rich calcium binding protein precursor [Homo
           sapiens]
          Length = 699

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 29  HNSLIEAVEEVPEDSALVFH-ATNDQPKGHREDHE 62
           H+ L++  EE  E +    H   + QP+GH+ D E
Sbjct: 370 HHGLVDEEEEEEEITVQFGHYVASHQPRGHKSDEE 404


>gi|153085395 histone deacetylase 4 [Homo sapiens]
          Length = 1084

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 25  AHQPHNSLIEAVEEVPEDSALVFHATNDQPKGHREDHEAQGV 66
           A QP +   E  EE+ E  AL+     D+  G +E H   GV
Sbjct: 515 ARQPESHPEETEEELREHQALLDEPYLDRLPGQKEAHAQAGV 556


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,071,827
Number of Sequences: 37866
Number of extensions: 164564
Number of successful extensions: 409
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 13
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.