Guide to the Human Genome
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Name: LOC100289597 Sequence: fasta or formatted (103aa) NCBI GI: 239746179
Description:

PREDICTED: hypothetical protein XP_002343669

Not currently referenced in the text

Other entries for this name:
alt mRNA {103aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         11           1
 C cysteine            0.0          0           0
 D aspartate           5.8          6           1
 E glutamate           6.8          7           2
 F phenylalanine       2.9          3           1
 G glycine             8.7          9           2
 H histidine           7.8          8           1
 I isoleucine          5.8          6           1
 K lysine              1.9          2           1
 L leucine             7.8          8           2
 M methionine          1.9          2           1
 N asparagine          3.9          4           1
 P proline             5.8          6           1
 Q glutamine           6.8          7           1
 R arginine            4.9          5           1
 S serine              7.8          8           2
 T threonine           2.9          3           1
 V valine              4.9          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343669 
LOC100291715          1.000   PREDICTED: hypothetical protein XP_002345191 
LOC100289597          1.000   PREDICTED: hypothetical protein 
GOPC                  0.016   golgi associated PDZ and coiled-coil motif containing...
GOPC                  0.016   golgi associated PDZ and coiled-coil motif containin...
OTUD3                 0.011   OTU domain containing 3 
NUP107                0.011   nucleoporin 107kDa 
FAM71B                0.005   family with sequence similarity 71, member B 
LOC100134253          0.005   PREDICTED: hypothetical protein 
LOC100290887          0.005   PREDICTED: hypothetical protein XP_002348233 
HRC                   0.005   histidine rich calcium binding protein precursor [Hom...
HDAC4                 0.005   histone deacetylase 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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