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Search of human proteins with 239746084
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746084 PREDICTED: similar to hCG1979072 [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757062 PREDICTED: similar to hCG1979072 [Homo sapiens] 239 5e-64
gi|239751572 PREDICTED: similar to hCG1979072 [Homo sapiens] 239 5e-64
gi|239746084 PREDICTED: similar to hCG1979072 [Homo sapiens] 239 5e-64
gi|48255933 high-mobility group nucleosome binding domain 1 [Hom... 173 2e-44
gi|239757066 PREDICTED: hypothetical protein [Homo sapiens] 116 5e-27
gi|239751576 PREDICTED: hypothetical protein [Homo sapiens] 115 6e-27
gi|239746088 PREDICTED: hypothetical protein [Homo sapiens] 115 6e-27
gi|20270186 high mobility group nucleosomal binding domain 3 iso... 68 1e-12
gi|5031749 high-mobility group nucleosomal binding domain 2 [Hom... 62 1e-10
gi|169165669 PREDICTED: similar to high-mobility group nucleosom... 58 2e-09
gi|113415254 PREDICTED: similar to high-mobility group nucleosom... 58 2e-09
gi|113414676 PREDICTED: similar to high-mobility group nucleosom... 58 2e-09
gi|169202834 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-09
gi|169165461 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-09
gi|89034591 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-09
gi|169165899 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-09
gi|89033815 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-09
gi|169165087 PREDICTED: hypothetical protein [Homo sapiens] 57 3e-09
gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens] 56 6e-09
gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens] 56 6e-09
gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens] 56 6e-09
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 55 1e-08
gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens] 54 2e-08
gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens] 54 2e-08
gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo ... 54 2e-08
gi|169209024 PREDICTED: similar to high-mobility group nucleosom... 53 5e-08
gi|113425750 PREDICTED: similar to high-mobility group nucleosom... 53 5e-08
gi|113425298 PREDICTED: similar to high-mobility group nucleosom... 53 5e-08
gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens] 53 6e-08
gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo ... 53 6e-08
>gi|239757062 PREDICTED: similar to hCG1979072 [Homo sapiens]
Length = 121
Score = 239 bits (609), Expect = 5e-64
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA 60
MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA
Sbjct: 1 MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA 60
Query: 61 AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS 120
AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS
Sbjct: 61 AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS 120
Query: 121 D 121
D
Sbjct: 121 D 121
>gi|239751572 PREDICTED: similar to hCG1979072 [Homo sapiens]
Length = 121
Score = 239 bits (609), Expect = 5e-64
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA 60
MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA
Sbjct: 1 MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA 60
Query: 61 AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS 120
AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS
Sbjct: 61 AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS 120
Query: 121 D 121
D
Sbjct: 121 D 121
>gi|239746084 PREDICTED: similar to hCG1979072 [Homo sapiens]
Length = 121
Score = 239 bits (609), Expect = 5e-64
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA 60
MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA
Sbjct: 1 MATFEMMMSKACMSGNQLKPRSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEAKPKKA 60
Query: 61 AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS 120
AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS
Sbjct: 61 AAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAKS 120
Query: 121 D 121
D
Sbjct: 121 D 121
>gi|48255933 high-mobility group nucleosome binding domain 1 [Homo
sapiens]
Length = 100
Score = 173 bits (439), Expect = 2e-44
Identities = 88/90 (97%), Positives = 88/90 (97%)
Query: 32 GGAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQET 91
G AKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQ EVANQET
Sbjct: 11 GAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQAEVANQET 70
Query: 92 KEDLPAENGETKTEESPASDEAGEKEAKSD 121
KEDLPAENGETKTEESPASDEAGEKEAKSD
Sbjct: 71 KEDLPAENGETKTEESPASDEAGEKEAKSD 100
>gi|239757066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 116 bits (290), Expect = 5e-27
Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 2/88 (2%)
Query: 35 KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKR-GAKGKQTEVANQETK 92
KEEPKR SARLS KP A KVE KPK ++KSSDKKVQTKGK+ GAKG+Q ++ANQETK
Sbjct: 28 KEEPKRTSARLSVKPAAAKVEMKPKMKTGENKSSDKKVQTKGKKNGAKGEQGDMANQETK 87
Query: 93 EDLPAENGETKTEESPASDEAGEKEAKS 120
ED PAEN + KTEE+PA DE EKEAKS
Sbjct: 88 EDRPAENSDMKTEENPAFDEMREKEAKS 115
>gi|239751576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 115 bits (289), Expect = 6e-27
Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 2/88 (2%)
Query: 35 KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKR-GAKGKQTEVANQETK 92
KEEPKR SARLS KP A KVE KPK ++KSSDKKVQTKGK+ GAKG+Q ++ANQETK
Sbjct: 28 KEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQETK 87
Query: 93 EDLPAENGETKTEESPASDEAGEKEAKS 120
ED PAEN + KTEE+PA DE EKEAKS
Sbjct: 88 EDRPAENSDMKTEENPAFDEMREKEAKS 115
>gi|239746088 PREDICTED: hypothetical protein [Homo sapiens]
Length = 116
Score = 115 bits (289), Expect = 6e-27
Identities = 63/88 (71%), Positives = 71/88 (80%), Gaps = 2/88 (2%)
Query: 35 KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKR-GAKGKQTEVANQETK 92
KEEPKR SARLS KP A KVE KPK ++KSSDKKVQTKGK+ GAKG+Q ++ANQETK
Sbjct: 28 KEEPKRTSARLSVKPAAAKVEMKPKMKTRENKSSDKKVQTKGKKNGAKGEQGDMANQETK 87
Query: 93 EDLPAENGETKTEESPASDEAGEKEAKS 120
ED PAEN + KTEE+PA DE EKEAKS
Sbjct: 88 EDRPAENSDMKTEENPAFDEMREKEAKS 115
>gi|20270186 high mobility group nucleosomal binding domain 3
isoform HMGN3a [Homo sapiens]
Length = 99
Score = 68.2 bits (165), Expect = 1e-12
Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 9/96 (9%)
Query: 20 PRSASLEDLCGVGGAK---EEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKG 75
P+ S E+ G G+K +EP RRSARLSAKP P K E KP+K +AK K+ K
Sbjct: 2 PKRKSPENTEGKDGSKVTKQEPTRRSARLSAKPAPPKPEPKPRKTSAK-----KEPGAKI 56
Query: 76 KRGAKGKQTEVANQETKEDLPAENGETKTEESPASD 111
RGAKGK+ E + P+ENGETK EE+ ++
Sbjct: 57 SRGAKGKKEEKQEAGKEGTAPSENGETKAEEAQKTE 92
>gi|5031749 high-mobility group nucleosomal binding domain 2 [Homo
sapiens]
Length = 90
Score = 62.0 bits (149), Expect = 1e-10
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRSARLSAKP P K E KPKKA AK KG++ KGK+ + A+ +
Sbjct: 18 KDEPQRRSARLSAKPAPPKPEPKPKKAPAK----------KGEKVPKGKKGK-ADAGKEG 66
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ KT+++ ++ AG+
Sbjct: 67 NNPAENGDAKTDQAQKAEGAGD 88
>gi|169165669 PREDICTED: similar to high-mobility group nucleosomal
binding domain 2 [Homo sapiens]
Length = 90
Score = 57.8 bits (138), Expect = 2e-09
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRS RLSAKP P K E KPKKA AK KG++ KGK+ + A+ +
Sbjct: 18 KDEPQRRSVRLSAKPAPPKPEPKPKKAPAK----------KGEKVPKGKKGK-ADAGEEG 66
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG KT+++ ++ G+
Sbjct: 67 NNPAENGVAKTDQAQKAESPGD 88
>gi|113415254 PREDICTED: similar to high-mobility group nucleosomal
binding domain 2 [Homo sapiens]
Length = 90
Score = 57.8 bits (138), Expect = 2e-09
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRS RLSAKP P K E KPKKA AK KG++ KGK+ + A+ +
Sbjct: 18 KDEPQRRSVRLSAKPAPPKPEPKPKKAPAK----------KGEKVPKGKKGK-ADAGEEG 66
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG KT+++ ++ G+
Sbjct: 67 NNPAENGVAKTDQAQKAESPGD 88
>gi|113414676 PREDICTED: similar to high-mobility group nucleosomal
binding domain 2 [Homo sapiens]
Length = 90
Score = 57.8 bits (138), Expect = 2e-09
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRS RLSAKP P K E KPKKA AK KG++ KGK+ + A+ +
Sbjct: 18 KDEPQRRSVRLSAKPAPPKPEPKPKKAPAK----------KGEKVPKGKKGK-ADAGEEG 66
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG KT+++ ++ G+
Sbjct: 67 NNPAENGVAKTDQAQKAESPGD 88
>gi|169202834 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 57.4 bits (137), Expect = 3e-09
Identities = 42/98 (42%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 20 PRSASLEDLCGVGG-AKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKR 77
PR + D GV K++P+RRS RL+AKP P K +KPKK AK+ +KV KGK+
Sbjct: 15 PRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKN---GEKV-LKGKK 70
Query: 78 GAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGE 115
G E N PAENGETKT+ + ++ AG+
Sbjct: 71 GKADAGKEGNN-------PAENGETKTDHAQKAEGAGD 101
>gi|169165461 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 57.4 bits (137), Expect = 3e-09
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRS R SAKP P K E KPKKA AK KG++ KGK+ + A+ +
Sbjct: 68 KDEPQRRSMRFSAKPAPPKPEPKPKKAPAK----------KGEKIPKGKKGK-ADAGEEG 116
Query: 94 DLPAENGETKTEESPASDEAG 114
+ PAENG+ KT+++ ++ AG
Sbjct: 117 NNPAENGDAKTDQAQKAEGAG 137
>gi|89034591 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 57.4 bits (137), Expect = 3e-09
Identities = 42/98 (42%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 20 PRSASLEDLCGVGG-AKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKR 77
PR + D GV K++P+RRS RL+AKP P K +KPKK AK+ +KV KGK+
Sbjct: 15 PRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKN---GEKV-LKGKK 70
Query: 78 GAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGE 115
G E N PAENGETKT+ + ++ AG+
Sbjct: 71 GKADAGKEGNN-------PAENGETKTDHAQKAEGAGD 101
>gi|169165899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 57.4 bits (137), Expect = 3e-09
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRS R SAKP P K E KPKKA AK KG++ KGK+ + A+ +
Sbjct: 68 KDEPQRRSMRFSAKPAPPKPEPKPKKAPAK----------KGEKIPKGKKGK-ADAGEEG 116
Query: 94 DLPAENGETKTEESPASDEAG 114
+ PAENG+ KT+++ ++ AG
Sbjct: 117 NNPAENGDAKTDQAQKAEGAG 137
>gi|89033815 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 57.4 bits (137), Expect = 3e-09
Identities = 42/98 (42%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Query: 20 PRSASLEDLCGVGG-AKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKR 77
PR + D GV K++P+RRS RL+AKP P K +KPKK AK+ +KV KGK+
Sbjct: 15 PRRKAKGDAKGVKAKVKDKPQRRSVRLTAKPAPPKPGSKPKKGPAKN---GEKV-LKGKK 70
Query: 78 GAKGKQTEVANQETKEDLPAENGETKTEESPASDEAGE 115
G E N PAENGETKT+ + ++ AG+
Sbjct: 71 GKADAGKEGNN-------PAENGETKTDHAQKAEGAGD 101
>gi|169165087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 140
Score = 57.4 bits (137), Expect = 3e-09
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 12/81 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRS R SAKP P K E KPKKA AK KG++ KGK+ + A+ +
Sbjct: 68 KDEPQRRSMRFSAKPAPPKPEPKPKKAPAK----------KGEKIPKGKKGK-ADAGEEG 116
Query: 94 DLPAENGETKTEESPASDEAG 114
+ PAENG+ KT+++ ++ AG
Sbjct: 117 NNPAENGDAKTDQAQKAEGAG 137
>gi|169162318 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 193
Score = 56.2 bits (134), Expect = 6e-09
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRSARLSAKP + K E KPKKA AK KG++ K K+ + A+ +
Sbjct: 53 KDEPQRRSARLSAKPSSPKPEPKPKKAPAK----------KGEKVLKEKKGK-ADAGKEG 101
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ KT++ ++ AG+
Sbjct: 102 NNPAENGDAKTDQEQKAEGAGD 123
>gi|169161838 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 176
Score = 56.2 bits (134), Expect = 6e-09
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRSARLSAKP + K E KPKKA AK KG++ K K+ + A+ +
Sbjct: 36 KDEPQRRSARLSAKPSSPKPEPKPKKAPAK----------KGEKVLKEKKGK-ADAGKEG 84
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ KT++ ++ AG+
Sbjct: 85 NNPAENGDAKTDQEQKAEGAGD 106
>gi|169162671 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 176
Score = 56.2 bits (134), Expect = 6e-09
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKPPA-KVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K+EP+RRSARLSAKP + K E KPKKA AK KG++ K K+ + A+ +
Sbjct: 36 KDEPQRRSARLSAKPSSPKPEPKPKKAPAK----------KGEKVLKEKKGK-ADAGKEG 84
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ KT++ ++ AG+
Sbjct: 85 NNPAENGDAKTDQEQKAEGAGD 106
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 55.5 bits (132), Expect = 1e-08
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 30 GVGGAKEEPKRRSARLSAK-PPAKVEAKPKKAAAKDKSSDK------KVQTKGKRGAKGK 82
G G ++EPKRRSARLSA P E KPK+ ++ K K + T + A+ K
Sbjct: 8 GQGDMRQEPKRRSARLSAMLVPVTPEVKPKRTSSSRKMKTKSDMMEENIDTSAQAVAETK 67
Query: 83 QTEVANQETKEDLPAENGETKTEESPASDE 112
Q V ++ E+ A+NGE K E+PAS++
Sbjct: 68 QEAVVEEDYNEN--AKNGEAKITEAPASEK 95
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 36 EEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKEDL 95
E K A+++ P ++ E K + +++K + K A+ K E +E +ED
Sbjct: 78 ENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQ 137
Query: 96 PAENGETKTEESPASDEAGEKEAKSD 121
E GE E+ DE GE++ K D
Sbjct: 138 NEEKGEAGKED---KDEKGEEDGKED 160
Score = 31.6 bits (70), Expect = 0.15
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 32 GGAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQE- 90
G K E ++ K K+ K + D KV+ K GK+ E N+E
Sbjct: 189 GKEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEE 248
Query: 91 ---TKEDLPAENGETKTEESPASDEAGEKE 117
KEDL E E EE ++ G+KE
Sbjct: 249 AGKEKEDLKEE--EEGKEEDEIKEDDGKKE 276
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 21 RSASLEDLCGVGGAKEEPKRRSARLSAKPPAKVEA--KPKKAAAKDKSSDKKVQTKGKRG 78
+ ++ED GG K+E + + + E +K A + D+K + GK
Sbjct: 101 KEENIEDATEKGGEKKEAVAAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKED 160
Query: 79 AKGKQTEVANQETKEDLPAENGETKTEE--SPASDEAGEKEAK 119
G + +E ++ E+G+ E+ DE E++ K
Sbjct: 161 KNGNEKGEDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRK 203
>gi|239755359 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 130
Score = 54.3 bits (129), Expect = 2e-08
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 10/82 (12%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K++P+RRS RLSAKP P K E KPK A AK +KV KGK+GA+ A+ +
Sbjct: 56 KDKPQRRSMRLSAKPAPPKPEPKPKNAPAK---KGEKV-PKGKKGARR-----ADAGKEG 106
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ K +E+ ++ G+
Sbjct: 107 NNPAENGDAKRDEAQKAEGTGD 128
>gi|239749851 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 171
Score = 54.3 bits (129), Expect = 2e-08
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 10/82 (12%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K++P+RRS RLSAKP P K E KPK A AK +KV KGK+GA+ A+ +
Sbjct: 97 KDKPQRRSMRLSAKPAPPKPEPKPKNAPAK---KGEKV-PKGKKGARR-----ADAGKEG 147
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ K +E+ ++ G+
Sbjct: 148 NNPAENGDAKRDEAQKAEGTGD 169
>gi|239744152 PREDICTED: hypothetical protein XP_002343066 [Homo
sapiens]
Length = 171
Score = 54.3 bits (129), Expect = 2e-08
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 10/82 (12%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
K++P+RRS RLSAKP P K E KPK A AK +KV KGK+GA+ A+ +
Sbjct: 97 KDKPQRRSMRLSAKPAPPKPEPKPKNAPAK---KGEKV-PKGKKGARR-----ADAGKEG 147
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ K +E+ ++ G+
Sbjct: 148 NNPAENGDAKRDEAQKAEGTGD 169
>gi|169209024 PREDICTED: similar to high-mobility group nucleosomal
binding domain 2 [Homo sapiens]
Length = 90
Score = 53.1 bits (126), Expect = 5e-08
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
+++P+RRSARLS KP P K E KPKK AK+ G++ KG+ + A+ +
Sbjct: 18 RDKPQRRSARLSTKPAPPKPETKPKKVPAKN----------GEKVLKGEMGK-ADTGKEG 66
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ KT+++ + AG+
Sbjct: 67 NKPAENGDAKTDQTQKGEGAGD 88
>gi|113425750 PREDICTED: similar to high-mobility group nucleosomal
binding domain 2 [Homo sapiens]
Length = 90
Score = 53.1 bits (126), Expect = 5e-08
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
+++P+RRSARLS KP P K E KPKK AK+ G++ KG+ + A+ +
Sbjct: 18 RDKPQRRSARLSTKPAPPKPETKPKKVPAKN----------GEKVLKGEMGK-ADTGKEG 66
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ KT+++ + AG+
Sbjct: 67 NKPAENGDAKTDQTQKGEGAGD 88
>gi|113425298 PREDICTED: similar to high-mobility group nucleosomal
binding domain 2 [Homo sapiens]
Length = 90
Score = 53.1 bits (126), Expect = 5e-08
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 12/82 (14%)
Query: 35 KEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKGKQTEVANQETKE 93
+++P+RRSARLS KP P K E KPKK AK+ G++ KG+ + A+ +
Sbjct: 18 RDKPQRRSARLSTKPAPPKPETKPKKVPAKN----------GEKVLKGEMGK-ADTGKEG 66
Query: 94 DLPAENGETKTEESPASDEAGE 115
+ PAENG+ KT+++ + AG+
Sbjct: 67 NKPAENGDAKTDQTQKGEGAGD 88
>gi|239753184 PREDICTED: similar to hCG2040565 [Homo sapiens]
Length = 197
Score = 52.8 bits (125), Expect = 6e-08
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 20 PRSASLEDLCGVGGAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRG 78
P+ + D+ G + P+RRS RLSAKP P K E KPKKA AK KG++
Sbjct: 110 PKRKTEGDVKGDKAKVDTPQRRSTRLSAKPAPPKPEPKPKKAPAK----------KGEKV 159
Query: 79 AKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAK 119
KGK+ + A+ + + PAE G+ T++ A + G+ EAK
Sbjct: 160 PKGKKGK-ADAGKEGNYPAEKGDAITDQ--AREAEGDGEAK 197
>gi|239747758 PREDICTED: hypothetical protein XP_002348261 [Homo
sapiens]
Length = 197
Score = 52.8 bits (125), Expect = 6e-08
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 14/101 (13%)
Query: 20 PRSASLEDLCGVGGAKEEPKRRSARLSAKP-PAKVEAKPKKAAAKDKSSDKKVQTKGKRG 78
P+ + D+ G + P+RRS RLSAKP P K E KPKKA AK KG++
Sbjct: 110 PKRKTEGDVKGDKAKVDTPQRRSTRLSAKPAPPKPEPKPKKAPAK----------KGEKV 159
Query: 79 AKGKQTEVANQETKEDLPAENGETKTEESPASDEAGEKEAK 119
KGK+ + A+ + + PAE G+ T++ A + G+ EAK
Sbjct: 160 PKGKKGK-ADAGKEGNYPAEKGDAITDQ--AREAEGDGEAK 197
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.298 0.116 0.303
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,657,899
Number of Sequences: 37866
Number of extensions: 191315
Number of successful extensions: 2110
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 943
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.