Guide to the Human Genome
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Name: LOC100288734 Sequence: fasta or formatted (123aa) NCBI GI: 239745876
Description:

PREDICTED: hypothetical protein XP_002343570

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3          9           2
 C cysteine            4.1          5           2
 D aspartate           0.8          1           1
 E glutamate           4.9          6           1
 F phenylalanine       0.8          1           1
 G glycine             7.3          9           2
 H histidine           2.4          3           1
 I isoleucine          1.6          2           1
 K lysine              2.4          3           1
 L leucine            13.0         16           2
 M methionine          3.3          4           1
 N asparagine          4.1          5           1
 P proline             8.9         11           1
 Q glutamine           4.9          6           1
 R arginine            9.8         12           2
 S serine             11.4         14           3
 T threonine           3.3          4           1
 V valine              5.7          7           1
 W tryptophan          1.6          2           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343570 
LOC100289821          1.000   PREDICTED: hypothetical protein XP_002347820 
LOC100292462          0.996   PREDICTED: hypothetical protein 
ZNF469                0.022   zinc finger protein 469 
DGCR2                 0.009   integral membrane protein DGCR2 
FAM175B               0.009   hypothetical protein LOC23172 
CCKAR                 0.009   cholecystokinin A receptor 
MTMR4                 0.009   myotubularin related protein 4 
PARD3                 0.009   partitioning-defective protein 3 homolog 
MAST1                 0.009   microtubule associated serine/threonine kinase 1 [Ho...
DGKK                  0.009   diacylglycerol kinase kappa 
FRMD4A                0.009   FERM domain containing 4A 
L3MBTL                0.004   l(3)mbt-like isoform I 
L3MBTL                0.004   l(3)mbt-like isoform II 
SPATS2                0.004   spermatogenesis associated, serine-rich 2 
DBN1                  0.004   drebrin 1 isoform b 
DBN1                  0.004   drebrin 1 isoform a 
PRSS36                0.004   protease, serine, 36 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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