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Search of human proteins with 239745003
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745003 PREDICTED: hypothetical protein XP_002343328 [Homo
sapiens]
(80 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750695 PREDICTED: hypothetical protein [Homo sapiens] 165 8e-42
gi|239745003 PREDICTED: hypothetical protein XP_002343328 [Homo ... 165 8e-42
gi|239756148 PREDICTED: hypothetical protein XP_002344839 [Homo ... 157 2e-39
gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens] 33 0.064
gi|169211729 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens] 30 0.54
gi|31657142 integrin, alpha 1 precursor [Homo sapiens] 28 1.2
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens] 28 1.6
gi|209862787 hypothetical protein LOC100191040 [Homo sapiens] 28 2.1
gi|50083281 KIAA1853 protein [Homo sapiens] 28 2.1
gi|19923198 runt-related transcription factor 1 isoform AML1c [H... 27 2.7
gi|49574546 runt-related transcription factor 1 isoform AML1b [H... 27 2.7
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 26 7.8
>gi|239750695 PREDICTED: hypothetical protein [Homo sapiens]
Length = 80
Score = 165 bits (417), Expect = 8e-42
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 60
MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA
Sbjct: 1 MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 60
Query: 61 RVSAAQNLPGWSAPIVAPPL 80
RVSAAQNLPGWSAPIVAPPL
Sbjct: 61 RVSAAQNLPGWSAPIVAPPL 80
>gi|239745003 PREDICTED: hypothetical protein XP_002343328 [Homo
sapiens]
Length = 80
Score = 165 bits (417), Expect = 8e-42
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 60
MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA
Sbjct: 1 MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 60
Query: 61 RVSAAQNLPGWSAPIVAPPL 80
RVSAAQNLPGWSAPIVAPPL
Sbjct: 61 RVSAAQNLPGWSAPIVAPPL 80
>gi|239756148 PREDICTED: hypothetical protein XP_002344839 [Homo
sapiens]
Length = 174
Score = 157 bits (396), Expect = 2e-39
Identities = 78/80 (97%), Positives = 78/80 (97%)
Query: 1 MAIASGGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 60
MAIASGGLS VERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA
Sbjct: 95 MAIASGGLSPVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRA 154
Query: 61 RVSAAQNLPGWSAPIVAPPL 80
RVSAAQNLPG SAPIVAPPL
Sbjct: 155 RVSAAQNLPGRSAPIVAPPL 174
>gi|169212138 PREDICTED: similar to hCG2040688 [Homo sapiens]
Length = 247
Score = 32.7 bits (73), Expect = 0.064
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 19 LRQENKTSWRKVSLHSPAPSRRPGLAATASWVHS 52
L + ++ +WR + LH PS RPGL A A HS
Sbjct: 112 LGRSSRNTWRTLCLHLGHPSLRPGLKAGAHHTHS 145
>gi|169211729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 19 LRQENKTSWRKVSLHSPAPSRRPGLAATASWVHS 52
L + ++ +WR + LH PS RPGL A A S
Sbjct: 112 LGRSSRNTWRTLCLHLGHPSLRPGLKAGAHHTRS 145
>gi|169210847 PREDICTED: similar to hCG2040688 [Homo sapiens]
Length = 247
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 19 LRQENKTSWRKVSLHSPAPSRRPGLAATASWVHS 52
L + ++ +WR + LH PS RPGL A A S
Sbjct: 112 LGRSSRNTWRTLCLHLGHPSLRPGLKAGAHHTRS 145
>gi|31657142 integrin, alpha 1 precursor [Homo sapiens]
Length = 1179
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 34 SPAPSRRPGLAATASWVHSVAKRCYRARVSAAQNLPGWSAPI 75
+P P RPG+A W+ +V RC + +N +S P+
Sbjct: 2 APRPRARPGVAVACCWLLTVVLRCCVSFNVDVKNSMTFSGPV 43
>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
Length = 566
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 34 SPAPSRRPGLAATASWVHSVAKRCYRARVSAAQNLPGWSAPIVA 77
SP+PS P A A + +RC + VS A++ PG +A + A
Sbjct: 105 SPSPSPSPAKPAGAELRRAFLERCLSSPVS-AESFPGGAAAVAA 147
>gi|209862787 hypothetical protein LOC100191040 [Homo sapiens]
Length = 353
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 10 LVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAK--RCYRARVSAAQN 67
L R+ AFL + T R+ H P P+ GL A S +H A R RA S +
Sbjct: 85 LAGREGWAFLPESPHTRRRESLFHGPPPAPAGGLPAAQSRLHVSAPDLRLCRAPDSDTAS 144
Query: 68 LPGWSAPIVAP 78
P S+P +P
Sbjct: 145 SPD-SSPFGSP 154
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 13 RDCLAFLRQENKTSWRK--VSLHSPAPSRRPGLAATASWVHSVAKR 56
RD + L TS RK + + P+PS L++T+SW S + R
Sbjct: 498 RDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSR 543
>gi|19923198 runt-related transcription factor 1 isoform AML1c [Homo
sapiens]
Length = 480
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 6 GGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRARVSAA 65
G LS ER L+ L Q +T+ R VS H PAP+ P + S + +
Sbjct: 217 GSLSFSER--LSELEQLRRTAMR-VSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQI 273
Query: 66 QNLPGWS 72
Q P WS
Sbjct: 274 QPSPPWS 280
>gi|49574546 runt-related transcription factor 1 isoform AML1b [Homo
sapiens]
Length = 453
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 6 GGLSLVERDCLAFLRQENKTSWRKVSLHSPAPSRRPGLAATASWVHSVAKRCYRARVSAA 65
G LS ER L+ L Q +T+ R VS H PAP+ P + S + +
Sbjct: 190 GSLSFSER--LSELEQLRRTAMR-VSPHHPAPTPNPRASLNHSTAFNPQPQSQMQDTRQI 246
Query: 66 QNLPGWS 72
Q P WS
Sbjct: 247 QPSPPWS 253
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 40 RPGLAATASWVHSVAKRCYRARVSAAQNLPGWSAPIVAPPL 80
R GL A A+ RA AA L GW+ +V+P L
Sbjct: 569 RAGLLAAAARPGLAGSGVQRALALAAAQLGGWTTCVVSPNL 609
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.128 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,440,831
Number of Sequences: 37866
Number of extensions: 131238
Number of successful extensions: 424
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 13
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.