Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744917
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744917 PREDICTED: hypothetical protein XP_002343306 [Homo
sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750610 PREDICTED: hypothetical protein [Homo sapiens] 518 e-147
gi|239744917 PREDICTED: hypothetical protein XP_002343306 [Homo ... 518 e-147
gi|239756081 PREDICTED: hypothetical protein [Homo sapiens] 495 e-140
gi|123701326 zinc finger protein 831 [Homo sapiens] 31 0.88
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 29 3.3
gi|158186612 transmembrane protein 118 isoform 2 [Homo sapiens] 29 3.3
gi|38044112 restin isoform b [Homo sapiens] 29 4.3
gi|4506751 restin isoform a [Homo sapiens] 29 4.3
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 29 4.3
gi|55750053 atrophin-1 [Homo sapiens] 29 4.3
gi|55750041 atrophin-1 [Homo sapiens] 29 4.3
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens] 28 7.4
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ... 28 7.4
gi|38158015 mastermind-like 3 [Homo sapiens] 28 7.4
gi|55741655 anoctamin 8 [Homo sapiens] 28 9.7
gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens] 28 9.7
>gi|239750610 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 518 bits (1334), Expect = e-147
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60
MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH
Sbjct: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60
Query: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW 120
PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW
Sbjct: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW 120
Query: 121 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 180
VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE
Sbjct: 121 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 180
Query: 181 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 240
DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC
Sbjct: 181 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 240
Query: 241 CHLRPWMA 248
CHLRPWMA
Sbjct: 241 CHLRPWMA 248
>gi|239744917 PREDICTED: hypothetical protein XP_002343306 [Homo
sapiens]
Length = 248
Score = 518 bits (1334), Expect = e-147
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60
MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH
Sbjct: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60
Query: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW 120
PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW
Sbjct: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW 120
Query: 121 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 180
VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE
Sbjct: 121 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 180
Query: 181 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 240
DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC
Sbjct: 181 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 240
Query: 241 CHLRPWMA 248
CHLRPWMA
Sbjct: 241 CHLRPWMA 248
>gi|239756081 PREDICTED: hypothetical protein [Homo sapiens]
Length = 244
Score = 495 bits (1274), Expect = e-140
Identities = 241/248 (97%), Positives = 241/248 (97%), Gaps = 4/248 (1%)
Query: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60
MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH
Sbjct: 1 MASEEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLLSPLIRPASRWAAH 60
Query: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLLW 120
PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGK STKPVSKLLW
Sbjct: 61 PAVLMDAGRPRQNWPMGIGYPSITWLFLTRQNQRSWKPVNAGKSIM----STKPVSKLLW 116
Query: 121 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 180
VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE
Sbjct: 117 VEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEALGKE 176
Query: 181 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 240
DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC
Sbjct: 177 DHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLVCGILAHLGGVILDAEKVISLC 236
Query: 241 CHLRPWMA 248
CHLRPWMA
Sbjct: 237 CHLRPWMA 244
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 31.2 bits (69), Expect = 0.88
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 120 WVEVRECLEAGPRSREDLCPRLGRVKVGVSSNVGAWEVGMGQEAALTIEGRAVAMEAL 177
W+E RE + R+++ L PR G ++G S + + +V G AL R A+E L
Sbjct: 516 WLEPREPRDPWSRTQKPLSPRPGPARLGCRSGLSSTDVPSGHPRALV---RQAAVEDL 570
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 29.3 bits (64), Expect = 3.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 14 HQEQQQHGQHHGSRAHRPAALLVHLNDDH 42
H Q H HHG HR +LL H+ DH
Sbjct: 108 HHRQPHHHFHHGG--HRGGSLLQHVGGDH 134
>gi|158186612 transmembrane protein 118 isoform 2 [Homo sapiens]
Length = 420
Score = 29.3 bits (64), Expect = 3.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 14 HQEQQQHGQHHGSRAHRPAALLVHLNDDH 42
H Q H HHG HR +LL H+ DH
Sbjct: 108 HHRQPHHHFHHGG--HRGGSLLQHVGGDH 134
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 28.9 bits (63), Expect = 4.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 4 EEEDCKAHRQHQEQQQHGQHHGSR 27
+ EDC Q E H HHGSR
Sbjct: 1343 DTEDCPTQAQMSEDPPHSTHHGSR 1366
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 28.9 bits (63), Expect = 4.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 4 EEEDCKAHRQHQEQQQHGQHHGSR 27
+ EDC Q E H HHGSR
Sbjct: 1378 DTEDCPTQAQMSEDPPHSTHHGSR 1401
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 28.9 bits (63), Expect = 4.3
Identities = 24/77 (31%), Positives = 30/77 (38%)
Query: 160 GQEAALTIEGRAVAMEALGKEDHDVGLLLMALTDVGIGHLAEAQWCGTLPHAERLANGLV 219
GQE I+ ++E + ED V L L D + TL A R+ G V
Sbjct: 17 GQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGGKV 76
Query: 220 CGILAHLGGVILDAEKV 236
G LA G V KV
Sbjct: 77 HGSLARAGKVRGQTPKV 93
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 28.9 bits (63), Expect = 4.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 4 EEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVH 37
+++ + +Q Q+QQQ QHHG+ P H
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPH 517
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 28.9 bits (63), Expect = 4.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 4 EEEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVH 37
+++ + +Q Q+QQQ QHHG+ P H
Sbjct: 484 QQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPH 517
>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 28.1 bits (61), Expect = 7.4
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 105 HYVLRPSTKPVSKLLWVEVRECLEAGPRSREDLCPRLGRVKVG 147
H+ L P KP + + C P + ED P LG +G
Sbjct: 31 HWTLEPGRKPTHSGTGITPQGCTSEAPIAAEDSIPELGEGVLG 73
>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
sapiens]
Length = 459
Score = 28.1 bits (61), Expect = 7.4
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 105 HYVLRPSTKPVSKLLWVEVRECLEAGPRSREDLCPRLGRVKVG 147
H+ L P KP + + C P + ED P LG +G
Sbjct: 31 HWTLEPGRKPTHSGTGITPQGCTSEAPIAAEDSIPELGEGVLG 73
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 28.1 bits (61), Expect = 7.4
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 5 EEDCKAHRQHQEQQQHGQHHGSRAHRPAALLVHLNDDHLRLLL---SPLIRPASRWAAHP 61
++ + +Q Q+QQQ Q + P A HL++D RLLL ++ +AA P
Sbjct: 629 QQQQQQQQQQQQQQQQQQPPPPQLQAPRA---HLSEDQKRLLLMKQKGVMNQPMAYAALP 685
Query: 62 AVLMD---AGRPRQNWPMGIGYP 81
+ + G PR PM P
Sbjct: 686 SHGQEQHPVGLPRTTGPMQSSVP 708
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 27.7 bits (60), Expect = 9.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 5 EEDCKAHRQHQEQQQHGQHHGSRAH 29
++ + R+ +E+Q+H +HH R H
Sbjct: 898 QQQQRRRREEEERQRHAEHHARREH 922
>gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens]
Length = 228
Score = 27.7 bits (60), Expect = 9.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 86 LFLTRQNQRSWKPVNAGKVHYVLRPSTKPVSKLL 119
L T Q Q+ W VN + Y R ST ++KLL
Sbjct: 163 LLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLL 196
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,558,883
Number of Sequences: 37866
Number of extensions: 497056
Number of successful extensions: 1220
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 23
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.