Guide to the Human Genome
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Name: LOC100288791 Sequence: fasta or formatted (248aa) NCBI GI: 239744917
Description:

PREDICTED: hypothetical protein XP_002343306

Not currently referenced in the text

Other entries for this name:
alt mRNA {248aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         26           2
 C cysteine            2.8          7           2
 D aspartate           3.6          9           2
 E glutamate           6.5         16           3
 F phenylalanine       0.4          1           1
 G glycine             8.9         22           2
 H histidine           6.0         15           2
 I isoleucine          3.2          8           1
 K lysine              3.2          8           1
 L leucine            12.9         32           3
 M methionine          2.8          7           1
 N asparagine          2.4          6           1
 P proline             5.6         14           1
 Q glutamine           4.4         11           3
 R arginine            7.7         19           1
 S serine              4.8         12           2
 T threonine           2.4          6           1
 V valine              7.7         19           1
 W tryptophan          3.2          8           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343306 
LOC100288791          1.000   PREDICTED: hypothetical protein 
LOC100293077          0.953   PREDICTED: hypothetical protein 
ZNF831                0.012   zinc finger protein 831 
RNFT2                 0.008   transmembrane protein 118 isoform 1 
RNFT2                 0.008   transmembrane protein 118 isoform 2 
CLIP1                 0.008   restin isoform b 
CLIP1                 0.008   restin isoform a 
FAU                   0.008   ubiquitin-like protein fubi and ribosomal protein S30...
ATN1                  0.008   atrophin-1 
ATN1                  0.008   atrophin-1 
LOC100292296          0.006   PREDICTED: hypothetical protein 
LOC100290476          0.006   PREDICTED: hypothetical protein XP_002347412 
MAML3                 0.006   mastermind-like 3 
ANO8                  0.006   anoctamin 8 
C20orf11              0.006   chromosome 20 open reading frame 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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